Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5001g00025 ATGCTTGGTAATGGGAAATCAGTGGATTTGTATAAGCTCTTCAAGGTTGTTAAGGAGAACGGTGGGTATGACGCAGTCTCCAAAAACCGTTTATGGGATCTGGTGGGTGAAAAATCTGGGTTGGGTACGAGCATTGGTTCATTTGTGCAACTGATTTACAATAAGTACTTGATTACTTTAGAGATATGGCTAAAGCAAGCTGCTGATAATAAGGTCTCTGACTGTAGTCTGGAGTTTAACAGAGTTGATTTTGGCAGGCATTTGATGGAGTTGCACGCAGAATTCGAGGGGTCCTTGTCGGACTGTACTGATGAAGAGTTGGGAGATGAGATGTGTCAACGTTCTGAGTTTAAAACTGAATATGAACGCCAGGATGGTGGGGTGTTGTTCGATGCTAAGGGAGTGAAGAGCAGGTCTGGAGGGGCCAAAAAAGTTCAGAATGGAGGATTTATTGATTTAAATATACCAGGATTTGACTTGAATGAACTCGCAACAACAATTGAGTTGAATGAACTCAGTCCAGGAAATTTGTGCATTAAGAGTGAGGTAAACAAAATGCCCATATTATCGGATGGAGGCATGAAATGTGCCAATGATGATGATATTTTGATATTGGACCCATCTGATGTAAATGAAGAGAGCTTCAATCGTAAAAGGAAGAGGGAGTCTATGCAGGGAATGCTAAACTGGTTGACTGGCATTGCAAAGAATCCCTGTGATCCTGTTGTTGATTCGATGCCTGAAAAATCAAAGTGGAGGTCTCACACCAACGAGAAGGTCTGGAAGCAGGTTTTATTGTTTCGGGAGGCTGTTTTTCTAAAGCGACATGCTGATTCAAGCAGTGAACAACTGAATTGGCAGAGACAAAAGATGCATCCATCTATGTATGAAGATCACCTTGAGGCAACGTACAATCTTAGGGAGAGGTGGAAGTGTGCCAAGAAGCTTATATTTGAAAAATCTATGTCTGCAAGAGTCTCTTCAGATTCATCCATTGAAACCAAGGGTAATCTGGAGAAAACTTCAAGTCCTCACAATGAAGATTCTGCTGAGAAAGAGCTGCCTGATTCCTCAAGTGCGCCATCGGGTATTGACAAATGTGGCATAGTTCCCATCCCTCTGGGGCCAAGTCACCAAGCTAAAGTACCAGAATGGACTGGCATGACTTCTGAAAGTGATTCCAAGTGGTTGGGGACCCGAATATGGCCATTAGAGAAAGTGAATCACAGACTCCTGATTGAGAGGGACCCCATTGGCAGGGGAAGACAAGATTCATGTGGCTGCCAAGTACCAGGTTCTGTTGAATGTGTCAGATTTCACGTTTCCGAGAAAAGGGCTAAGGTGAAGCTGGAGTTAGGTGTGGCTTTTTACCTGTGGAATTTACATAGGGTCGGTGAAGATGTTAGGCAATCATGGACAGTGGATGAAGAGAAGAAGTTTAAGGATGTGGTGCGATCAAATCCTCCATCATTAGAGAGATACTATTGGGATCATATTTTTAAAGCCTTTCCTAAGAAGACCAGGGAAGATTTAGTTAGCTACTATTTCAATGTCTATCTTTTGCAGCGCCGAGGATACCAGAACAGGAGTACTCCAAATGAAATTGATAGTGATGATGAAGAATCAGAATTTGGACCCTTGAGGAATGTTTTTGGACAACAAGCACAGAAGCCAGCCAGTTCCATCTTACTAACCCCCAAAAAGTCTCAGACAAAGAACAAATAG 1725 0.4272 MLGNGKSVDLYKLFKVVKENGGYDAVSKNRLWDLVGEKSGLGTSIGSFVQLIYNKYLITLEIWLKQAADNKVSDCSLEFNRVDFGRHLMELHAEFEGSLSDCTDEELGDEMCQRSEFKTEYERQDGGVLFDAKGVKSRSGGAKKVQNGGFIDLNIPGFDLNELATTIELNELSPGNLCIKSEVNKMPILSDGGMKCANDDDILILDPSDVNEESFNRKRKRESMQGMLNWLTGIAKNPCDPVVDSMPEKSKWRSHTNEKVWKQVLLFREAVFLKRHADSSSEQLNWQRQKMHPSMYEDHLEATYNLRERWKCAKKLIFEKSMSARVSSDSSIETKGNLEKTSSPHNEDSAEKELPDSSSAPSGIDKCGIVPIPLGPSHQAKVPEWTGMTSESDSKWLGTRIWPLEKVNHRLLIERDPIGRGRQDSCGCQVPGSVECVRFHVSEKRAKVKLELGVAFYLWNLHRVGEDVRQSWTVDEEKKFKDVVRSNPPSLERYYWDHIFKAFPKKTREDLVSYYFNVYLLQRRGYQNRSTPNEIDSDDEESEFGPLRNVFGQQAQKPASSILLTPKKSQTKNK 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5001g00025 574 SMART ELM2_2 372 423 IPR000949 -
Pral5001g00025 574 Pfam ARID/BRIGHT DNA binding domain 4 60 IPR001606 GO:0003677
Pral5001g00025 574 SMART sant 468 521 IPR001005 -
Pral5001g00025 574 MobiDBLite consensus disorder prediction 328 362 - -
Pral5001g00025 574 SMART bright_3 2 66 IPR001606 GO:0003677
Pral5001g00025 574 CDD ARID 4 61 - -
Pral5001g00025 574 MobiDBLite consensus disorder prediction 340 354 - -
Pral5001g00025 574 CDD SANT 471 518 IPR001005 -
Pral5001g00025 574 MobiDBLite consensus disorder prediction 529 574 - -
Pral5001g00025 574 Gene3D - 1 75 IPR036431 GO:0003677
Pral5001g00025 574 SUPERFAMILY ARID-like 4 75 IPR036431 GO:0003677
Pral5001g00025 574 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 2 1 571 - -
Pral5001g00025 574 Pfam Myb-like DNA-binding domain 469 517 IPR001005 -
Pral5001g00025 574 MobiDBLite consensus disorder prediction 553 574 - -
Pral5001g00025 574 ProSiteProfiles ARID domain profile. 1 65 IPR001606 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5001g00025 Pral-Chr5001 147537 151556 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Pral5001g00025 ARID 3e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5001g00025 - - pcin:129291322 1070.84