Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5001g00006 ATGGCTGTGGCGAGTGCTGTGCCTGCAATTACACGAGGTTTCAGGTCTGTGGGGTTTTCTCAGGACTTTGGGGTCACCGGCAACATGGCTGGGGTGGAAGAAATTGTAGAGGAGCCTAACAAAAGTGTGGTTAATGACACTATTTATGTTACTGTGGCAAAAGATTTGAAAGAGAGCAAGTTAAATCTGACATGGGCTATACAAAACTCTGGAGGAAACAAGATTTGCATCCTCCATGTTCATGTGCCTGCAACTAAGATCCCCTTGATGGGCACTAAGTTTCCAGCAAGTTCATTGAAAGAAGAGGAAGTTGAAGCATACAGGGAGCTTGAAAGGCAAAACATGCATAAGAATCTAAATGAACATCTTCTCTTCTGTTCGCGAATGGGGGTGCAAGCAGAGGAGTTGCATATGGAAATGGAATGCATCGAGAAAGGTATTGTACAGCTTGTCTCTGAGCATGGTATCTGTGAGCTTGTGATGGGGGCAGCATCTGATAATCGTTATTCTAGGAAAATGCCGGACCTCAAATCCAAGAAAGCCATTTATGTAAGTGAACATGCTGCAGCTTATTGTCGGATACGGTTTGTCTGCAAAGGGCGCCTTATACACACTAGAAATCGCTGCTTGGATGATGGTAATGAAGAGGTTGCATCACCTTTGCCGCCACAGAGGCCAAACCCTGAAGTTGTGCGTGCACCTCAGTTGAGGTCTCAATCTGTTACGGTGGGGCAGAATGATCGGAAAAGGCTGGAGTTACTTCCCAGAGCAAGGTCTGCCATTTCTGGGCATGAAGGGAGAATAGAGACCTTTTCTTCTCCTGACACAGAACGGTTTTCCAGTCCAAGTAACATATTGGGTATAGAAGCAGACGGGCTGTCAAGAAAGAGTCCTTCAGTTTTATCAACATGTTCTGAAAGTGGTGCTGTTGAAGCAGCATTGACTCCTAAATTGATTTATGAGGGGAGTGAAAATGTAATAGAATCAAGTGAATTTTCTCCAGTTAAAGCAAGTCTCCATCGTCCATCTCCTGTTAGCGTACTGGATGGAGGAATGGATGACTCTCTCTACTATCAACTTGAACAAGCCATGTATGAAGCTGAGACTGCTAGGCGGAATGCCTTTCAAGAAACACTTAGGCGTGGGAGAGCTGAAAAAGATGCACTTGATGCTATGCGGAGGGCCAAAACATCTGAAAGCTTGTATAAAGAAGGACTCAAACAAAGGAAACGAGTCGAGGAAGCGCTAGAAAAAGAAAGAGAAGAACTTGAAGGGGTGAAGGGCAACAGAGACAAAGTTAAGGAAGAACTAAGACTTGCCCTTGATCAAAAGCTGTCTTTAGAGAGTCAAATTGAATCATCTGTATTCATGGTAAGGGAGTTAGAGCAGAAGATTATATCTATGGTGGATCTGTTGACAACATACAAGAAAGAAAGAGATGAGTTACAGATGCAGCGCAATGATGCATTGAAAGAGGCTGAGGAGTTGAGGAAAAAACAAGGAGAGGTTTCAAGCGTCAATGGGCCTGAGTCGTTTTCAGAGTTCTCTTTTCAAGAGATTGAACATGCAACAAGAAACTTCCATTCATCCCTAAAGATTGGAGAAGGGGGATATGGAAATATCTATAAAGGTACCTTGCGTCAAACCGAAGTGGCCATAAAGATGTTGCACGCAGACAACAAATCGCAAGGACCTGCAGAGTTTCAACAGGAGGTTGATGTATTGAGTAAGCTAAGACATCCCAACCTTATCACCCTCGTAGGAGCCTGCCCAGAATCCTGGACTCTTGTCTACGAGTATCTACCAAATGGAAGCCTTGAAGACCGTCTCAATTGCAAGGATAACATGGCTCCATTATTATGGCAAACTCGAATTCGCATTGCTGCTGAGCTCTGTTCTGCTCTCATCTTCCTTCATTGCCATAGACCTCACTCCATAGTGCATGGAGACTTGAAACCCTCTAATGTTCTACTTGATGCTAACTTTGTTAGCAAGCTTAGTGACTTTGGAATTTGCCGCATATTATCCAATATTGGGACTTCAGGTGATGATACTACAGATTGTTGTCGAACTGTTCCAAAGGGTACTCTAGTCTACATGGACCCCGAATTTCTCACCTCTGGGTATCTTACGCTAAAATCAGATGTTTATTCATTTGGCATCATATTATTAAGATTGCTGACTGGGAGACCAGCCATGGGGATAGCAAAGGAAGTGCAATACGCACTAGACACTAGAAAGTTTAAATCCCTCTTGGATCCTTTGGCTGGAGACTGGCCATATGTGCAAGCTGAACAGTTGGCTCGTGTGGCTCTAAGGTGTTGTGAGTGGAATCGAAAGAACCGACCAGATCTTCGTTCAGATGTCTGGACGATACTGGAAGCAATGACTGCTTTTTGTGGAGGCACGGATTCCTTTTCCTTTAAACTGGGTTATAAAGGGTCTGACCAGCCTCCTTCATGTTTTATCTGTCCAATCCTTCAGGAACTGATGCTGGATCCGCATATTGCAGCGGATGGTTTTTCATATGACGGTGAGGCGGTACGACGATGGCTCGACAGTGGTCAGGACACGTCACCCATGACAAACGCAAAGCTTAAACATCGTGAAATTGTGCCAAACCACGCTCTTCGCAGTGCAATTCAGGACTGGCTACAAAATCACTGA 2667 0.4447 MAVASAVPAITRGFRSVGFSQDFGVTGNMAGVEEIVEEPNKSVVNDTIYVTVAKDLKESKLNLTWAIQNSGGNKICILHVHVPATKIPLMGTKFPASSLKEEEVEAYRELERQNMHKNLNEHLLFCSRMGVQAEELHMEMECIEKGIVQLVSEHGICELVMGAASDNRYSRKMPDLKSKKAIYVSEHAAAYCRIRFVCKGRLIHTRNRCLDDGNEEVASPLPPQRPNPEVVRAPQLRSQSVTVGQNDRKRLELLPRARSAISGHEGRIETFSSPDTERFSSPSNILGIEADGLSRKSPSVLSTCSESGAVEAALTPKLIYEGSENVIESSEFSPVKASLHRPSPVSVLDGGMDDSLYYQLEQAMYEAETARRNAFQETLRRGRAEKDALDAMRRAKTSESLYKEGLKQRKRVEEALEKEREELEGVKGNRDKVKEELRLALDQKLSLESQIESSVFMVRELEQKIISMVDLLTTYKKERDELQMQRNDALKEAEELRKKQGEVSSVNGPESFSEFSFQEIEHATRNFHSSLKIGEGGYGNIYKGTLRQTEVAIKMLHADNKSQGPAEFQQEVDVLSKLRHPNLITLVGACPESWTLVYEYLPNGSLEDRLNCKDNMAPLLWQTRIRIAAELCSALIFLHCHRPHSIVHGDLKPSNVLLDANFVSKLSDFGICRILSNIGTSGDDTTDCCRTVPKGTLVYMDPEFLTSGYLTLKSDVYSFGIILLRLLTGRPAMGIAKEVQYALDTRKFKSLLDPLAGDWPYVQAEQLARVALRCCEWNRKNRPDLRSDVWTILEAMTAFCGGTDSFSFKLGYKGSDQPPSCFICPILQELMLDPHIAADGFSYDGEAVRRWLDSGQDTSPMTNAKLKHREIVPNHALRSAIQDWLQNH 888
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5001g00006 888 FunFam receptor-like protein kinase FERONIA 490 600 - -
Pral5001g00006 888 Gene3D Phosphorylase Kinase; domain 1 497 600 - -
Pral5001g00006 888 ProSitePatterns Serine/Threonine protein kinases active-site signature. 646 658 IPR008271 GO:0004672|GO:0006468
Pral5001g00006 888 CDD RING-Ubox_WDSUB1-like 819 874 - -
Pral5001g00006 888 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 816 888 IPR013083 -
Pral5001g00006 888 Gene3D Transferase(Phosphotransferase) domain 1 601 799 - -
Pral5001g00006 888 Coils Coil 402 450 - -
Pral5001g00006 888 ProSiteProfiles U-box domain profile. 817 888 IPR003613 GO:0004842|GO:0016567
Pral5001g00006 888 ProSitePatterns Protein kinases ATP-binding region signature. 533 554 IPR017441 GO:0005524
Pral5001g00006 888 SMART Ubox_2 821 884 IPR003613 GO:0004842|GO:0016567
Pral5001g00006 888 SUPERFAMILY RING/U-box 816 887 - -
Pral5001g00006 888 CDD STK_N 47 200 - -
Pral5001g00006 888 Pfam U-box domain 819 888 IPR003613 GO:0004842|GO:0016567
Pral5001g00006 888 Pfam Protein kinase domain 528 785 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral5001g00006 888 ProSiteProfiles Protein kinase domain profile. 527 799 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral5001g00006 888 SMART serkin_6 527 793 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral5001g00006 888 Coils Coil 472 499 - -
Pral5001g00006 888 SUPERFAMILY Protein kinase-like (PK-like) 503 786 IPR011009 -
Pral5001g00006 888 PANTHER OS02G0152300 PROTEIN 48 883 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5001g00006 Pral-Chr5001 53745 58727 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5001g00006 1 888 U-box Gene Family AT2G45910 50.556 0.0 847
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Pral5001g00006 Pkinase 5.5e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5001g00006 - - qsa:O6P43_027236 1112.44