Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pral5001g00004 | ATGGCTCCTACTGCAAAAATTTTTATCGAAGACTTGAACTCCAGCAAAGACACATGGAGTTTGCATGCGAAGATTGTCAGGAAATGGCCGGTGCCCAGAAAGATCCCTCCTTATGCTGTGTGGAAGGTATCCATGCTATTAGTGGATGAACAGGAAAGTAGGATTGAAGCATTTACCACTCAGAAATCACTAATTAGACGTATCATTGAAGAACTTCGGGAGGGGGTAGTGTATCATTTTGAGAACTTTGAAGTGCTCCTTAACAAAGATGAGTACAAGGTTACAGATTGTAAATATAAGTTAAGCTTTCATTGTTCAACATCGATCGAGGAAAGTGATCTTTCAATTCCATTTGATGCATTCAACTTCGTTACAATCAAGGATGTTGCTGAGTTTAATGCCAACAATGAAGACTTGATAGATGTTATTGGGTTTTTACAATCATTTGGAGATTTGAAGGATCATAAAAAAGAAGGGGGTAGTACAAGGAAGCTCAGTTTCACAATTGCGGATGAGAATGAGAGATCTGTCAATGTGGTAGTATTCGGTCAGTGTGCCAATGAAATATTTAGAGCCAAAGGGGAAGACTTACAACCACCTATTGTTGTGCTCCTTCGTTTTGCAAGAATCAACAGGGGAAAAGGTTTCGGACATTTAACTAATCAGTTTGAGGGGACCAAGGTAGTTTTCAATCCTGACCTCCCTGAGACCAAGAAACTACTTGACAGTCTTGAAGATAATCCAGTTGCAAGTCAAAGTTTATCCCAGGTATCAAGCTGTGTCATTGCAACTGCTACAAATGAGTCACTCTTAAGTTTCCCTTGCAGGATTAATGTAGCTCAGATAATGAACTTCACTGAGCCATGTGAGGTTGTCACTAAGTTGGTCATTGAGAAGCTTGAAACAGCATATGGTTGGAATTACGATGGATGTCCATGTGATAAAAAACCATTCTATGTCAATGGGAAACTTAAGTGTAGCGCATGCAACACAGAAGTCAAGATGACTGAACCCAAGTTCAAAGTTCATTACAAAGCAAGGGATTCCACTGGTAAATGTTCAATCATTTTTTTCAATCGCTTAGCTTCTCAGTTATTGAACTGTGTTGCTGCCGACCTCAAGGATCAAATGATTAAGATGGGCAAGCCTATGGGATTTCCTAAAGAGCTGTCCGATTGCATAGGGAAGGAAGTCCTGGTCAAACTTAAAATCAAGGACTTCAACATCGGTCACCCGAATAGTAGCATGGGTGTCTCACAGTTTTCTGATGATATGCACATAATCGAAAGGTTCACATATAGCGAATACCAGGAAAATCCTCCAACTCTAACTGAGGCTTCACCGGTTGAATCGAGTGCGTCAAAATCCTCTCCAAAAATTGTCCTTGTGGAGGCAGAAGAAGATGATGACCTGACTGATTCACAGATTGTCACTCCAGAGGACACTAATGCAAAGAGGAGGAAACTGAGCAAAACCATCTCCCAAGCAGTTGATGACGGTGATGATCATGATAAGGCATATCAGAATATCTCATCAGTTGAAATGCAGATGAAGGAATGCCGATCTCAACATGATGGCGCACAGAACATAATTCAGGATCATTTCTCTATAAGGTCTAAAGCGGTTTATGAAACTCCAACGAAACCAATTTTACCCGACATTACTAATTCCCAAACGCTTTACAAAGAAGGAGGCTTTGAGGTTAATCCAACTTCATTTGCAAATCATGCTCCACCGGAAGACATTCAATATTTCTCAACCAATGGGGAAAGAGCTTTTTGTCCCAAGAGACGTCGTATTGAGAATGTCTCAAGTCTTGCTGAGAATCTAACCCATGAGCTTTATCATGACACCAGAAGAGAGGATATTTCAGCCTCAGAAGGTATTCAAGGAGATGACCACTTATATGATTCATTTAATATCAACCTTGATGGCTATCTTGATGAGGGAAATCCAGAATTTGAATGTCAATATTGTGGAGCTATGCTATGGTTCAATGAGAGAATAAAGAGAGCTCCATCTAATGAACGGCCAATTTTTTCAATATGTTGCTCCCATGGTAAAGTGTCTGTACCTCATTTACAGACTCCTCCTGAACAGCTCCGTAAACTTTTCTTTGACAAAGGTGATCCAAAATCCAAAAAGTTCCAATCAAGCATTAGAGCATATAATAATATGTTCTGCTTCACTTCAATGGGAGGGAAGATTAACCATTCTCTAAACAGTAATGGTGGGGGACCTTACACCTTTGTCATATCTGGACAGAACCACCACTATATAGGTAGTTTATTACCTGAAGAAGGAGCTAATCCAGTGTACTCTCAATTATATATTTATGATACGGAGCATGAAATAGCAAATCGGCTTTCAGCAATCAGGCATGCATCTGATATACTGAAGAGGGATCGCCATGCAAATGTCAAGATTTGCTTGATAAGGCATATGGGCCCTGACAATAGATGTTATAATCTTCCAACATCATCAGAAGTTGCTGCACTAATAGTTGGTGATTTTGACAGATCATATCACAAGAGAGATATTGTTGTGGAAAAACAAGGGACGCTCAAACGAATAGATGAATTTCACAGGTCATACCTACCATTACAGTACCCACTGTTATTTCATTTTGGAAATAATGGTTATGATCCAAATATTATGCACTCTACTCAATCTCTCTACCACACAAGGAAGAAGAAAAAATTGACTATTAGAGAATATCTAGCATATAGATTGATGAACAGGAAGAATGAAGAGTCTGTTATTTTGCATGCTAGAAGGTTATTCCAACAATTTATTGTTGATGGCTACACAATGGTTGAAAGTGATCGATTGAAGTACATAAGAGATCATCAAAAGGAAATAAGAGCCGACCTATACAAGGGAATCTCTGATGCTATTACAAGAGGTGAAACAAATGCATCAATGATTGGAAGAAGAGTTGTTCTTCCATCTTCATTTACAGGTGGTGCAAGATACATGGTGAACAATTTTCAGGATGCAATGGCAATTTGTAAATATGCAGGTTATCCAGATATATTCTTAACATTCACTTGTAATCCTGCTTGGCCGGAAGTAAAGCGTTACTGTACCGATTATGAGCTTAATCAATCAGATTGTCCGCAAATTTTATCAAGGATATTTAAATTGAAATTAGATGCTCTCATGAAAGTTATTAGGGAACAAAAAATATTCGGCAAGATTAGGGCAGAAATATACACAATCGAGTTTCAAAAGAGAGGATTGCCCCATGCTCATATCATTCTCTTCCTTGAACATGATGACAAGCCCAGAACACCAGAAGATGTGGATAAATTAATATGTGCAGAAATACCAGATAAAGAGTTAGATCCTGAGTTATATGAGCTCGTGGGTAATTACATGATTCATGGTCCATGTGGACACTCTAACAAGAATTCACCTTGCATGAAAGATGGAAAATGCTCGAAGTACTTTCCAAAAAAATATGTCGACAATACAGCTGTTGATGAAGAAGGGTACCCTACATACAGGAGGCGCAAAGATGGAAGGACTATAGAAAAAAAGGGCATACCATTAGATAATAGGTTTGTTGTGCCTTACAATCCACATTTGCTCAGATTATTCCGGGCTCATATTAATGTTGAAAAAACAAACCAGTCAAGAGCAGTCAAATACCTTTTCAAGTACATTAGCAAGGGGAATGACAGAGTTGTTGCAGGGATTTACAGCAATCCTGATACAAGTAGCTCAGAAACTTCATTCGATGAGATATCACATTATCTCAATTGTAGATATGTTTCACCTTGTGAAGCTGCATGGCGTATATTTGCTTTTGACATTCATCATAGATATCCTTCTGTCGAGCGTCTATCCTTTCACTTGCCAGAACAGCAAGTAGTCTACTACTCTGGGAAGTCATCTGTATCATCATTACTAGACAAGCCAAGGATGAAAGAATCGATGTTCTTAGCCTGGATGGACTTGAACAAATCTGGTGGGCTTGCAAAAACAATGACATACATACAGATTCCACAATACTATACTTTTGATAAGAATCAGAGAATATGGAAACCAAGGCAACGAGGATTTGCAGTTGGGAGATTAGCACATGCATCACCAACACAGGGAGAGATCTATTATTTGCGGGTTCTCCTCACCAAAGCACGAGGACCTAAATCGTATGAGGACATTAGAACTGTCGATGGTATTATCCATCCAACTTTTAAATCTGCATGTTATGCCCTTGGTTTGCTCAACGATGATCAAGAATTTATTGATGCAATCAAGGAGGCCTCAATCTGGGCATCTGGACATTACCTCAGAAAATTCTTTGTTAGTATGCTACTTTGCAACTGCTTATCACAACCACTTTTAGTTTGGCAGAAATCTAAGCAACTTATTTTTGAAGATATGTTGTATGTTGCCAGACCTCAACAACAACTATCAGGAATTAGTATAACTGATGATGAGAAGGAGGAAGTTGCACTGATTGAAATTGAAAGATTACTCAAGAGGAACGGGAAATCTTTGAGTGATTTCCCTTCAATGCCAAAGCCAAAAACAGATACACATATTGATATGAGGAACCATTTATTATTGCAGGAGCTGAACTATGACAGAGACAGCTGTAGATCTGAATCAGATAAGTTAAGAGCTTCCTTAACAGATGAGCAATTGAATATATTCAATGAGATCTTGAATGCAATTGACTCATCAAATGAAAATTTCTTTTTTGTTTATGGTTTTGGAGGTACTGGGAAGACATTCTTGTGGAATGCATTGACTGCAACTATTAGGGGAAGAGGTGAAATAGTGATAAACGTTGCATCAAGTGGGATTGCAGCAACGTTATTACCATCAGGCAGGACAGCTCACTCCAGGTTTGCAATACCAATAGATATAACTGAGGAATCAATGTGCAACATATCACACAACTCACCAATGTCTAACCTCATTAGAAATACAAAGTTATTCATATGGGATGAAGCTCCCATGGTTAGGAGATATTGCATTGAAGCTGTTGATAGAACATTTAAAGATATCATGAAGTGTGACCATCCATTTGGGGGAAAGTGTGTTGTCATGGGTGGAGACTTTAGACAAATATTGCCGGTTGTTCCAAAAGGAGGCCGTGCTGATATTGTTGATGCATCAATCAATTCATCTGAACTATGGAATCATTGTAGAATGTTTCAACTTACGAAAAACATGCGCCTATTATCAAGTGGAGATCATGGTGACAATTTGAAAGTCCAACAATTCTCAGAGTGGTTGCTTCAAGTTGGTGAAGGTAAAATAGGACTGCCAAATGAAGGTGTTACAGATATTGAGATTCCAAGTGAGATACTAATCCAATCATCTGATAATCATATTCAATCCATTGTGTCTGTTACTTATCCAAACTTAAAATACCATATCAATAATTCTGAATATCTGACCAACAGAGCAATCCTTGCACCAACTATTGAAGTGGTTGATCAAATAAATGATCATGTTTGTTCAATGCTTGATGGTGAATATGTAGAGTACTTCAGCTCAGATTCAATAACTGCTGCTGATCAAGACGTAGAGTTCCAAGAATTATACACTACTGAATTCTTAAACACCATCAACTGTTCTGGTCTTCCTCCTCATAGATTAGCATTGAAAGTAGGATGTCCTGTCATGCTCATCAGGAACATTGATCAAGCATCTGGTCTTTGTAATGGGACAAGACTTCAAACTACTTTCCTTGGTAAACATTTCATCAAAGCTATAGCATTGAATGGCACAAGTGTTGGTCAAGAAGTCCTCATCCATCGTATGGATATGAATCCATCTGAAACTAAGCTTCCATTCACAATGGTAAGGAGGCAATTCCCCCTCATTATTTCATTTGCAATGACCATAAATAAGAGTCAAGGACAATCAATGACTAATGTTGGTTTATATCTTCCAAGGCCAGTATTCTCACATGGGCAGCTGTATGTAGCAATGTCAAGGGTCAGAAGAATTGATGGTCTAAAGGTGTTGATCGTTGATTCGAATAATAAATCAACCAACATTACTACCAATGTTGTATACAGAGAGATATTTCAGAATGTTCATTGTCATTAG | 6075 | 0.3849 | MAPTAKIFIEDLNSSKDTWSLHAKIVRKWPVPRKIPPYAVWKVSMLLVDEQESRIEAFTTQKSLIRRIIEELREGVVYHFENFEVLLNKDEYKVTDCKYKLSFHCSTSIEESDLSIPFDAFNFVTIKDVAEFNANNEDLIDVIGFLQSFGDLKDHKKEGGSTRKLSFTIADENERSVNVVVFGQCANEIFRAKGEDLQPPIVVLLRFARINRGKGFGHLTNQFEGTKVVFNPDLPETKKLLDSLEDNPVASQSLSQVSSCVIATATNESLLSFPCRINVAQIMNFTEPCEVVTKLVIEKLETAYGWNYDGCPCDKKPFYVNGKLKCSACNTEVKMTEPKFKVHYKARDSTGKCSIIFFNRLASQLLNCVAADLKDQMIKMGKPMGFPKELSDCIGKEVLVKLKIKDFNIGHPNSSMGVSQFSDDMHIIERFTYSEYQENPPTLTEASPVESSASKSSPKIVLVEAEEDDDLTDSQIVTPEDTNAKRRKLSKTISQAVDDGDDHDKAYQNISSVEMQMKECRSQHDGAQNIIQDHFSIRSKAVYETPTKPILPDITNSQTLYKEGGFEVNPTSFANHAPPEDIQYFSTNGERAFCPKRRRIENVSSLAENLTHELYHDTRREDISASEGIQGDDHLYDSFNINLDGYLDEGNPEFECQYCGAMLWFNERIKRAPSNERPIFSICCSHGKVSVPHLQTPPEQLRKLFFDKGDPKSKKFQSSIRAYNNMFCFTSMGGKINHSLNSNGGGPYTFVISGQNHHYIGSLLPEEGANPVYSQLYIYDTEHEIANRLSAIRHASDILKRDRHANVKICLIRHMGPDNRCYNLPTSSEVAALIVGDFDRSYHKRDIVVEKQGTLKRIDEFHRSYLPLQYPLLFHFGNNGYDPNIMHSTQSLYHTRKKKKLTIREYLAYRLMNRKNEESVILHARRLFQQFIVDGYTMVESDRLKYIRDHQKEIRADLYKGISDAITRGETNASMIGRRVVLPSSFTGGARYMVNNFQDAMAICKYAGYPDIFLTFTCNPAWPEVKRYCTDYELNQSDCPQILSRIFKLKLDALMKVIREQKIFGKIRAEIYTIEFQKRGLPHAHIILFLEHDDKPRTPEDVDKLICAEIPDKELDPELYELVGNYMIHGPCGHSNKNSPCMKDGKCSKYFPKKYVDNTAVDEEGYPTYRRRKDGRTIEKKGIPLDNRFVVPYNPHLLRLFRAHINVEKTNQSRAVKYLFKYISKGNDRVVAGIYSNPDTSSSETSFDEISHYLNCRYVSPCEAAWRIFAFDIHHRYPSVERLSFHLPEQQVVYYSGKSSVSSLLDKPRMKESMFLAWMDLNKSGGLAKTMTYIQIPQYYTFDKNQRIWKPRQRGFAVGRLAHASPTQGEIYYLRVLLTKARGPKSYEDIRTVDGIIHPTFKSACYALGLLNDDQEFIDAIKEASIWASGHYLRKFFVSMLLCNCLSQPLLVWQKSKQLIFEDMLYVARPQQQLSGISITDDEKEEVALIEIERLLKRNGKSLSDFPSMPKPKTDTHIDMRNHLLLQELNYDRDSCRSESDKLRASLTDEQLNIFNEILNAIDSSNENFFFVYGFGGTGKTFLWNALTATIRGRGEIVINVASSGIAATLLPSGRTAHSRFAIPIDITEESMCNISHNSPMSNLIRNTKLFIWDEAPMVRRYCIEAVDRTFKDIMKCDHPFGGKCVVMGGDFRQILPVVPKGGRADIVDASINSSELWNHCRMFQLTKNMRLLSSGDHGDNLKVQQFSEWLLQVGEGKIGLPNEGVTDIEIPSEILIQSSDNHIQSIVSVTYPNLKYHINNSEYLTNRAILAPTIEVVDQINDHVCSMLDGEYVEYFSSDSITAADQDVEFQELYTTEFLNTINCSGLPPHRLALKVGCPVMLIRNIDQASGLCNGTRLQTTFLGKHFIKAIALNGTSVGQEVLIHRMDMNPSETKLPFTMVRRQFPLIISFAMTINKSQGQSMTNVGLYLPRPVFSHGQLYVAMSRVRRIDGLKVLIVDSNNKSTNITTNVVYREIFQNVHCH | 2024 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pral5001g00004 | 2024 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 1678 | 2020 | IPR027417 | - | |
| Pral5001g00004 | 2024 | CDD | SF1_C_RecD | 1951 | 1990 | - | - | |
| Pral5001g00004 | 2024 | Gene3D | - | 1544 | 1728 | IPR027417 | - | |
| Pral5001g00004 | 2024 | CDD | RPA1_DBD_A_like | 20 | 109 | - | - | |
| Pral5001g00004 | 2024 | Gene3D | - | 115 | 252 | IPR012340 | - | |
| Pral5001g00004 | 2024 | SUPERFAMILY | Nucleic acid-binding proteins | 8 | 112 | IPR012340 | - | |
| Pral5001g00004 | 2024 | Gene3D | - | 6 | 113 | IPR012340 | - | |
| Pral5001g00004 | 2024 | Pfam | Helitron helicase-like domain at N-terminus | 906 | 1088 | IPR025476 | - | |
| Pral5001g00004 | 2024 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 1510 | 1731 | IPR027417 | - | |
| Pral5001g00004 | 2024 | SUPERFAMILY | Nucleic acid-binding proteins | 121 | 245 | IPR012340 | - | |
| Pral5001g00004 | 2024 | Pfam | Domain of unknown function DUF223 | 45 | 136 | IPR003871 | - | |
| Pral5001g00004 | 2024 | MobiDBLite | consensus disorder prediction | 438 | 458 | - | - | |
| Pral5001g00004 | 2024 | PANTHER | UNCHARACTERIZED | 951 | 2000 | - | - | |
| Pral5001g00004 | 2024 | Pfam | PIF1-like helicase | 1547 | 1902 | IPR010285 | GO:0000723|GO:0003678|GO:0006281 | |
| Pral5001g00004 | 2024 | CDD | RPA1_DBD_B_like | 141 | 237 | - | - | |
| Pral5001g00004 | 2024 | Pfam | Replication factor-A C terminal domain | 297 | 406 | IPR013955 | - | |
| Pral5001g00004 | 2024 | SUPERFAMILY | Nucleic acid-binding proteins | 297 | 406 | IPR012340 | - | |
| Pral5001g00004 | 2024 | Gene3D | - | 266 | 426 | IPR012340 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Pral5001g00004 | Pral-Chr5001 | 26658 | 36467 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Pral5001g00004 | 47 | 404 | Core DNA Replication Machinery Family | AT5G08020 | 23.784 | 1.86e-19 | 93.2 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Pral5001g00004 | - | - | egt:105959667 | 1547.33 |