Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4999g00004 ATGGATCGGGGGGACCAAATGGCGTTATCTGGGTCTGCATCTTACTATATGCAGAGGGGAATGGCTGGTTCTGCCGGACAGACTGAGCTTCATGGTTCCCCATCTATTCACCAACTTTCTAATTCCAATTTATCATTTCAACCCAACATTGGGGGCGGTACTATTGGATCCACGCTACCGTTAGAATCTTCTGCCATTTCACCTCATGGTGTTAATGTAGGCGCTTCATCTGGAGTGCCATCTGGGGAACCTCTCAAACGGAAGAGAGGAAGGCCTAGGAAATATGGTCCAGATGGAACTGTGTCGTTGGCATTGACTCCGCTGTCGTCTAGTCATCCCGGAAGTGGTCATTCCGGAAGTGGAGCTGCGACACAGAGCCATAAGAGGGGTAGAGGGCGCCCACCAGGGACTGGCAAGAAACAACAGTTGGCTTCTCTTGGTGAATTCATGTCTGGTTCAGCTGGAATGGGTTTCACTCCTCATATCATCACCATTGCAGTTGGAGAAGATATTGTGTCAAAAATAATGGCATTCTCCCAGCAAGGGTCTAGAGCCGTGTGTGTATTGTCAGCCAATGGTGCTGTTTCCAATGCGACCCTCTGTCAGCCTTCAACTTTGGGTGGTTCTGTCACATATGAGGGGCGTTATGAGATATTGTGCCTGTCAGGCTCTTACTTGCTTAATGAAAGTGGTGGCTCGCGCAATCGAACTGGTGGATTGAGTGTCTCTCTTGCTAGTCCTGAGGGTAAAATCATCGGTGGAGGAGTCGGTGGAATGCTTATTGCAGCATGTCCCGTCCAGGTGATAGTTGGGAGCTTTCTATGGGGTGGATCAAAGACCAAGAACAAGAAAAAAGAAGTTGAAGAAGTTCCCGCGGAGTCAGATCATCAGGATCACCAGGCAGTTCATAATCCAGTTGCTATGAATAACATCATGGCCAATCAGAATCTCACCCCACCATCTTCTATCGGTACATGGCCGGCATCTCGAACGATGGACATTCGCAATTCCCATGTTGACATCGATTTAATGCGTGGGTGA 1041 0.488 MDRGDQMALSGSASYYMQRGMAGSAGQTELHGSPSIHQLSNSNLSFQPNIGGGTIGSTLPLESSAISPHGVNVGASSGVPSGEPLKRKRGRPRKYGPDGTVSLALTPLSSSHPGSGHSGSGAATQSHKRGRGRPPGTGKKQQLASLGEFMSGSAGMGFTPHIITIAVGEDIVSKIMAFSQQGSRAVCVLSANGAVSNATLCQPSTLGGSVTYEGRYEILCLSGSYLLNESGGSRNRTGGLSVSLASPEGKIIGGGVGGMLIAACPVQVIVGSFLWGGSKTKNKKKEVEEVPAESDHQDHQAVHNPVAMNNIMANQNLTPPSSIGTWPASRTMDIRNSHVDIDLMRG 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4999g00004 346 SMART AT_hook_2 128 140 IPR017956 GO:0003677
Pral4999g00004 346 SMART AT_hook_2 86 98 IPR017956 GO:0003677
Pral4999g00004 346 MobiDBLite consensus disorder prediction 70 142 - -
Pral4999g00004 346 CDD DUF296 159 273 IPR005175 -
Pral4999g00004 346 MobiDBLite consensus disorder prediction 20 44 - -
Pral4999g00004 346 FunFam AT-hook motif nuclear-localized protein 1-like 160 290 - -
Pral4999g00004 346 Gene3D - 160 298 - -
Pral4999g00004 346 SUPERFAMILY AF0104/ALDC/Ptd012-like 158 275 - -
Pral4999g00004 346 MobiDBLite consensus disorder prediction 28 44 - -
Pral4999g00004 346 ProSiteProfiles PPC domain profile profile. 154 297 IPR005175 -
Pral4999g00004 346 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 64 312 IPR039605 GO:0003680
Pral4999g00004 346 Pfam Plants and Prokaryotes Conserved (PCC) domain 160 273 IPR005175 -
Pral4999g00004 346 MobiDBLite consensus disorder prediction 103 125 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4999g00004 Pral-Chr4999 16681 23634 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4999g00004 1 346 AT-hook Motif Nuclear Localized (AHL) Family AT3G61310 48.098 9.92e-89 269
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4999g00004 - - qsa:O6P43_027221 461.84