LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pral4998g00008	ATGAACAATAGAGCTAGGTATCCACCTGGGATTGGCGTAGGTCGGGGGGGAGGCATGAACTCGAACCCTGCGTTTCAACCGCGACCCCCTCAGCAACAGTATGTGCAAAGGCACTTAGTGCAGAACCAACAGCAGTATCCGCATCAGTATCAACAGTACCAACAGCAACATCAGCAGTTACAGCAGCAGCAGCAGCAACAACAACAATGGCTTAGAAGAACGCAATTGATTGGTGCTGATTCTAACGTAGTTGACGAGGTCGAGAAGACTGTGCAGTCTGAAGCCGTTGATTCGAGTTCTCAAGATTGGAAGGCAAGATTGAAGATACCACCACCTGATACTCGCTATAGGACTGAGGATGTGACAGCAACTAAAGGAAATGAATTTGAAGATTACTTTTTGAAGCGTGAGCTGCTTATGGGAATATATGAGAAGGGTTTTGAAAGGCCTTCTCCTATCCAGGAAGAAAGTATCCCAATTGCTCTTACTGGTAGTGACATTCTCGCTAGAGCAAAAAATGGAACTGGAAAAACAGCTGCCTTTTGCGTTCCGGCACTAGAAAAAATTGATCAGGATAACAATGTTATTCAAGTTGTTATACTGGTCCCAACACGTGAATTGGCTTTGCAAACGTCACAAGTGTGTAAAGAGCTCGGAAAGCATCTGAGTATTCAAGTCATGGTTACGACGGGTGGTACCAGCCTGAAAGATGATATCATGCGTTTATATCAACCCGTTCATTTACTTGTTGGAACTCCAGGAAGAATATTAGATCTTGCAAAGAAGGGTGTCTGCGTTTTGAAAGACTGTAATATGCTTGTTATGGATGAGGCTGATAAACTTTTGTCACCAGAGTTCCAACCTTCAATAGAGCAATTGATTCATTTCATGCCTCCGAACCGTCAAATCCTGATGTTTTCAGCTACTTTTCCTGTTACTGTTAAGGACTTCAAAGATAGATATCTTCAGAAACCTTATATCATTAACCTTATGGATGAGTTAACTCTGAAAGGTATTACACAATTTTATGCATTTGTGGAAGAGAGACAGAAAGTCCACTGCCTCAATACACTTTTCTCTAAGCTGCAAATAAATCAGTCAATTATCTTCTGCAATTCGGTGAATCGGGTTGAGCTCCTTGCCAAGAAAATCACAGAACTTGGCTATTCATGCTTCTATATCCATGCAAAGATGTTGCAAGATCATCGAAACAGAGTGTTCCATGACTTCCGCAATGGTGCTTGTAGAAATCTTGTTTGTACGGATCTTTTTACCAGGGGAATAGACATTCAAGCAGTTAATGTGGTCATTAATTTTGATTTTCCCAAGAATTCAGAAACTTATCTGCACAGGGTTGGTCGTTCAGGGAGGTTTGGGCATCTTGGTCTAGCAGTTAACTTGATCACCTATGAGGATCGCTTTAATTTATATAGGATTGAGCAAGAACTTGGCACTGAAATAAAGCAAATTCCACCACACATTGATCAGGCAATTTATTGCCGGTGA	1506	0.417	MNNRARYPPGIGVGRGGGMNSNPAFQPRPPQQQYVQRHLVQNQQQYPHQYQQYQQQHQQLQQQQQQQQQWLRRTQLIGADSNVVDEVEKTVQSEAVDSSSQDWKARLKIPPPDTRYRTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCVPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLSIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLAKKGVCVLKDCNMLVMDEADKLLSPEFQPSIEQLIHFMPPNRQILMFSATFPVTVKDFKDRYLQKPYIINLMDELTLKGITQFYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAIYCR	501

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pral4998g00008	501	Pfam	DEAD/DEAH box helicase	152	316	IPR011545	GO:0003676\|GO:0005524
	Pral4998g00008	501	CDD	SF2_C_DEAD	339	468	-	-
	Pral4998g00008	501	FunFam	ATP-dependent RNA helicase DDX6	332	501	-	-
	Pral4998g00008	501	ProSitePatterns	DEAD-box subfamily ATP-dependent helicases signature.	274	282	IPR000629	-
	Pral4998g00008	501	ProSiteProfiles	DEAD-box RNA helicase Q motif profile.	127	155	IPR014014	GO:0003724
	Pral4998g00008	501	Coils	Coil	50	73	-	-
	Pral4998g00008	501	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	197	481	IPR027417	-
	Pral4998g00008	501	PANTHER	DEAD-BOX ATP-DEPENDENT RNA HELICASE 50	62	500	-	-
	Pral4998g00008	501	CDD	DEADc_DDX6	129	329	-	-
	Pral4998g00008	501	Gene3D	-	86	331	IPR027417	-
	Pral4998g00008	501	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	338	498	IPR001650	-
	Pral4998g00008	501	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	158	328	IPR014001	-
	Pral4998g00008	501	SMART	ultradead3	146	342	IPR014001	-
	Pral4998g00008	501	FunFam	ATP-dependent RNA helicase DDX6	108	331	-	-
	Pral4998g00008	501	Gene3D	-	332	501	IPR027417	-
	Pral4998g00008	501	SMART	helicmild6	378	459	IPR001650	-
	Pral4998g00008	501	Pfam	Helicase conserved C-terminal domain	353	459	IPR001650	-
	Pral4998g00008	501	MobiDBLite	consensus disorder prediction	1	30	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pral4998g00008	Pral-Chr4998	25238	31326	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pral4998g00008	127	498	Eukaryotic Initiation Factors Gene Family	AT3G19760	38.235	7.98e-96	294

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pral4998g00008	K12614		-	qsa:O6P43_027218	882.478