Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4996g00112 ATGAAGAAGCAGATTTTCATGCTGCGGTGGTTTGGAATCATGATCATGCAACTCTGCTTCTTGCTGGCTGGTTCTTCTGATGACAACATATCAGATAGCAGTGCTGCGGTTAAGCTGAATGCGGAAGATCCAGAGCAAGTGGTCATTGACAATGGCATCGTCCAACTCACTGTGTCTAAACCTCAAGGCTATGTCATTGGAATCTCATACCATGGAATCGACAATGTCCTAGAAACTCGTCACGCATTACACGACAGAGGGTATTTTGATGTAGTTTGGAATGAACCAGGAAAGAACAGTATTGCTCAAAGAATCAATGGGACCCATTTTTCAATTGTAGCGTCCGACGAGAGCCAAGTGGAGGTTTCGTTTGTAAGGACATGGACTTCCTCAATGCAAGGCACTGATGTGCCCATTAACATAGACCAAAGGTATGTAATGAGGCGAGGCAGCTCTGGATTTTACTCTTATGCAATATTTGAGCGTCCACAAAGTTTTCCAGCTGTGGAGGTTGATCAAGTTAGGACTGTCTACAAGCTCCAAGAACACAGGTTTCATTATATGGCTGTATCAGACAATAGGCAAAGATTCATGCCAACCATGGAAGATAGAGAGAGTGGGCAAGTTCTAGCTTATCCTGAAGCTGTTCTCCTAACCCTCCCATCCAACGAGGACTTCAAAGGAGAGGTGGACGACAAATATCAGTACTCTTGTGAGAACAAGGACAACAGAGTCCATGGCTGGATTAGCTTTGATTCTAAGGCACCTGTAGGCTTCTGGATGATAACACCAAGTGACGAGTTTCGCAACGCTGGACCCACTAAGCAAGACCTCACCTCTCATGTGGGCCCCATTACCCTCTCGATGTTTGTAAGCACCCACTACGGTGGGAAGGAGGTAACCATGGCATTTCAAGAAGGGGAGACCTACAAGAAGGTTTTTGGCCCTGTTTTTGTGTATCTGAACTCTCTTTCAAGCAATGAGGATCCACACACGCTTTGGCCAGATGCAGTGCAACGGATGTATAAGGAAGCCCGGAGCTGGCCTTATGATTTCCCACATTCACGGGACTTCATTCCACCAACTCGACGGGGAAGTGCGATTGGAAGATTAATAGTACAAGATCGGTATAACCGAGGAGGGAGACTTCTATATGGTGAATCTGCTTATGTTGGTCTGGCTCTACCCGGTTCTGAAGGATCATGGCAAAGAGAAAGCAAGGGCTATCAGTTTTGGACACAAGCTGATAACAAGGGCTATTTCATGATCAAGAATGTTATACCAGGGCACTATAACCTGTTTGCGTGGGTTCCTGGCTTTATTGGTGATTACAAGCATAATAACATGATCACTATCACGTCAGGTTTAGGCAATATGGACTGTGGGAACGTTATGCTGCTTTATATCCTCATAATGATCTAG 1422 0.4536 MKKQIFMLRWFGIMIMQLCFLLAGSSDDNISDSSAAVKLNAEDPEQVVIDNGIVQLTVSKPQGYVIGISYHGIDNVLETRHALHDRGYFDVVWNEPGKNSIAQRINGTHFSIVASDESQVEVSFVRTWTSSMQGTDVPINIDQRYVMRRGSSGFYSYAIFERPQSFPAVEVDQVRTVYKLQEHRFHYMAVSDNRQRFMPTMEDRESGQVLAYPEAVLLTLPSNEDFKGEVDDKYQYSCENKDNRVHGWISFDSKAPVGFWMITPSDEFRNAGPTKQDLTSHVGPITLSMFVSTHYGGKEVTMAFQEGETYKKVFGPVFVYLNSLSSNEDPHTLWPDAVQRMYKEARSWPYDFPHSRDFIPPTRRGSAIGRLIVQDRYNRGGRLLYGESAYVGLALPGSEGSWQRESKGYQFWTQADNKGYFMIKNVIPGHYNLFAWVPGFIGDYKHNNMITITSGLGNMDCGNVMLLYILIMI 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4996g00112 473 CDD RGL4_M 363 455 IPR029413 -
Pral4996g00112 473 Pfam Rhamnogalacturonate lyase family 32 230 IPR010325 -
Pral4996g00112 473 Gene3D - 39 337 IPR014718 GO:0030246
Pral4996g00112 473 CDD RGL4_N 46 323 - -
Pral4996g00112 473 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 39 456 - -
Pral4996g00112 473 SUPERFAMILY Starch-binding domain-like 407 453 IPR013784 GO:0030246
Pral4996g00112 473 Gene3D - 385 458 - -
Pral4996g00112 473 SUPERFAMILY Galactose mutarotase-like 42 325 IPR011013 GO:0003824|GO:0005975|GO:0030246
Pral4996g00112 473 Pfam Polysaccharide lyase family 4, domain II 387 455 IPR029413 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4996g00112 Pral-Chr4996 414777 419338 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4996g00112 34 456 Polysaccharide Lyase AT2G22620 56.604 1.30e-171 489
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4996g00112 K18195 - gmx:100776664 652.514