Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4996g00111 ATGAAGAAGCAGATTTTCATGCTGCGGTGGTTTGGAATCATGATCATGCAACTCTGCTTCTTGCTGGCTGGTTCTTCTGATGACAACATATCAGATAGCAGTGCTGCGGTTAAGCTGAATGCGGAAGATCCAGAGCAAGTGGTCATTGACAATGGCATCGTCCAACTCACTGTGTCTAAACCTCAAGGCTATGTCATTGGAATCTCATACCATGGAATCGACAATGTCCTAGAAACTCGTCACGCATTACACGACAGAGGGTATTTTGATGTAGTTTGGAATGAACCAGGAAAGAACAGTATTGCTCAAAGAATCAATGGGACCCATTTTTCAATTGTAGCGTCCGACGAGAGCCAAGTGGAGGTTTCGTTTGTAAGGACATGGACTTCCTCAATGCAAGGCACTGATGTGCCCATTAACATAGACCAAAGGTATGTAATGAGGCGAGGCAGCTCTGGATTTTACTCTTATGCAATATTTGAGCGTCCACAAAGTTTTCCAGCTGTGGAGGTTGATCAAGTTAGGACTGTCTACAAGCTCCAAGAACACAGGTTTCATTATATGGCTGTATCAGACAATAGGCAAAGATTCATGCCAACCATGGAAGATAGAGAGAGTGGGCAAGTTCTAGCTTATCCTGAAGCTGTTCTCCTAACCCTCCCATCCAACGAGGACTTCAAAGGAGAGGTGGACGACAAATATCAGTACTCTTGTGAGAACAAGGACAACAGAGTCCATGGCTGGATTAGCTTTGATTCTAAGGCACCTGTAGGCTTCTGGATGATAACACCAAGTGACGAGTTTCGCAACGCTGGACCCACTAAGCAAGACCTCACCTCTCATGTGGGCCCCATTACCCTCTCGATGTTTGTAAGCACCCACTACGGTGGGAAGGAGGTAACCATGGCATTTCAAGAAGGGGAGACCTACAAGAAGGTTTTTGGCCCTGTTTTTGTGTATCTGAACTCTCTTTCAAGCAATGAGGATCCACACACGCTTTGGCCAGATGCAGTGCAACGGATGTATAAGGAAGCCCGGAGCTGGCCTTATGATTTCCCACATTCACGGGACTTCATTCCACCAACTCGACGGGGAAGTGCGATTGGAAGATTAATAGTACAAGATCGGTATAACCGAGGAGGGAGACTTCTATATGGTGAATCTGCTTATGTTGGTCTGGCTCTACCCGGTTCTGAAGGATCATGGCAAAGAGAAAGCAAGGGCTATCAGTTTTGGACACAAGCTGATAACAAGGGCTATTTCATGATCAAGAATGTTATACCAGGGCACTATAACCTGTTTGCGTGGGTTCCTGGCTTTATTGGTGATTACAAGCATAATAACATGATCACTATCACGTCAGGCTCTCTAATCAAATTGGATTCACTTGTATATAGTCCTCCAAGAAATGGTTCTACCCTTTGGGAAATTGGATTTCCAGATCGCACAGCTGCAGAATTCTATATCCCAGACCCTAACCCTAAATTCATCAACAAATTATACAAAGAACAACCTACAAACAAGTTTAGGCAATATGGACTGTGGGAACGTTATGCTGCTTTATATCCTCATAATGATCTAGTTTACACTGTTGGAGTTGATAGGAGAATAGGAAATGGAGTATTTCAACCAACGACATGGCAAATTATATTTGAACTTAAAGACAATGCAATCAGAGGAAGTTATACTCTGCAGTTAGCCCTAGCGTCAGCCACTCATTCTCAATTGCAGATTTGGTTGAATGAGGAAGGTGATAATCCTGCACTATTTGAAAGAGTAAATATGGGAGAAGATAATGCAATAGCAAGGCATGGGATCCATGGATTATATTGGTTGTTCAGTATTGATATTCCAAGCGATCGTTTAGTGAAAGGAAGAAATACTATTTATTTAAGACAGTCAAATGCCACTAATCCTTTCCAGGGAGTTATGTATGACTATATTCGTTTAGAAAGACCTCCAACTCTAAATTAA 1974 0.4291 MKKQIFMLRWFGIMIMQLCFLLAGSSDDNISDSSAAVKLNAEDPEQVVIDNGIVQLTVSKPQGYVIGISYHGIDNVLETRHALHDRGYFDVVWNEPGKNSIAQRINGTHFSIVASDESQVEVSFVRTWTSSMQGTDVPINIDQRYVMRRGSSGFYSYAIFERPQSFPAVEVDQVRTVYKLQEHRFHYMAVSDNRQRFMPTMEDRESGQVLAYPEAVLLTLPSNEDFKGEVDDKYQYSCENKDNRVHGWISFDSKAPVGFWMITPSDEFRNAGPTKQDLTSHVGPITLSMFVSTHYGGKEVTMAFQEGETYKKVFGPVFVYLNSLSSNEDPHTLWPDAVQRMYKEARSWPYDFPHSRDFIPPTRRGSAIGRLIVQDRYNRGGRLLYGESAYVGLALPGSEGSWQRESKGYQFWTQADNKGYFMIKNVIPGHYNLFAWVPGFIGDYKHNNMITITSGSLIKLDSLVYSPPRNGSTLWEIGFPDRTAAEFYIPDPNPKFINKLYKEQPTNKFRQYGLWERYAALYPHNDLVYTVGVDRRIGNGVFQPTTWQIIFELKDNAIRGSYTLQLALASATHSQLQIWLNEEGDNPALFERVNMGEDNAIARHGIHGLYWLFSIDIPSDRLVKGRNTIYLRQSNATNPFQGVMYDYIRLERPPTLN 657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4996g00111 657 Pfam Rhamnogalacturonate lyase family 32 230 IPR010325 -
Pral4996g00111 657 Gene3D - 470 651 - -
Pral4996g00111 657 SUPERFAMILY Galactose-binding domain-like 470 651 IPR008979 -
Pral4996g00111 657 Gene3D - 39 337 IPR014718 GO:0030246
Pral4996g00111 657 CDD RGL4_C 475 651 - -
Pral4996g00111 657 SUPERFAMILY Starch-binding domain-like 407 461 IPR013784 GO:0030246
Pral4996g00111 657 Gene3D - 385 461 - -
Pral4996g00111 657 CDD RGL4_N 46 323 - -
Pral4996g00111 657 Pfam Polysaccharide lyase family 4, domain III 473 650 IPR029411 -
Pral4996g00111 657 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 39 654 - -
Pral4996g00111 657 CDD RGL4_M 363 463 IPR029413 -
Pral4996g00111 657 Pfam Polysaccharide lyase family 4, domain II 387 459 IPR029413 -
Pral4996g00111 657 SUPERFAMILY Galactose mutarotase-like 42 325 IPR011013 GO:0003824|GO:0005975|GO:0030246
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4996g00111 Pral-Chr4996 414777 419752 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4996g00111 37 653 Polysaccharide Lyase AT1G09890 54.818 0.0 706
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4996g00111 K18195 - gmx:100776664 926.006