Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4996g00110 ATGAAGAAGCAGATTTTCATGCTGCGGTGGTTTGGAATCATGATCATGCAACTCTGCTTCTTGCTGGCTGGTTCTTCTGATGACAACATATCAGATAGCAGTGCTGCGGTTAAGCTGAATGCGGAAGATCCAGAGCAAGTGGTCATTGACAATGGCATCGTCCAACTCACTGTGTCTAAACCTCAAGGCTATGTCATTGGAATCTCATACCATGGAATCGACAATGTCCTAGAAACTCGTCACGCATTACACGACAGAGGGTATTTTGATGTAGTTTGGAATGAACCAGGAAAGAACAGTATTGCTCAAAGAATCAATGGGACCCATTTTTCAATTGTAGCGTCCGACGAGAGCCAAGTGGAGGTTTCGTTTGTAAGGACATGGACTTCCTCAATGCAAGGCACTGATGTGCCCATTAACATAGACCAAAGGTATGTAATGAGGCGAGGCAGCTCTGGATTTTACTCTTATGCAATATTTGAGCGTCCACAAAGTTTTCCAGCTGTGGAGGTTGATCAAGTTAGGACTGTCTACAAGCTCCAAGAACACAGGTTTCATTATATGGCTGTATCAGACAATAGGCAAAGATTCATGCCAACCATGGAAGATAGAGAGAGTGGGCAAGTTCTAGCTTATCCTGAAGCTGTTCTCCTAACCCTCCCATCCAACGAGGACTTCAAAGGAGAGGTGGACGACAAATATCAGTACTCTTGTGAGAACAAGGACAACAGAGTCCATGGCTGGATTAGCTTTGATTCTAAGGCACCTGTAGGCTTCTGGATGATAACACCAAGTGACGAGTTTCGCAACGCTGGACCCACTAAGCAAGACCTCACCTCTCATGTGGGCCCCATTACCCTCTCGATGTTTGTAAGCACCCACTACGGTGGGAAGGAGGTAACCATGGCATTTCAAGAAGGGGAGACCTACAAGAAGGTTTTTGGCCCTGTTTTTGTGTATCTGAACTCTCTTTCAAGCAATGAGGATCCACACACGCTTTGGCCAGATGCAGTGCAACGGATGTATAAGGAAGCCCGGAGCTGGCCTTATGATTTCCCACATTCACGGGACTTCATTCCACCAACTCGACGGGGAAGTGCGATTGGAAGATTAATAGTACAAGATCGGTATAACCGAGGAGGGAGACTTCTATATGGTGAATCTGCTTATGTTGGTCTGGCTCTACCCGGTTCTGAAGGATCATGGCAAAGAGAAAGCAAGGGCTATCAGTTTTGGACACAAGCTGATAACAAGGGCTATTTCATGATCAAGAATGTTATACCAGGGCACTATAACCTGTTTGCGTGGGTTCCTGGCTTTATTGGTGATTACAAGCATAATAACATGATCACTATCACGTCAGGCTCTCTAATCAAATTGGATTCACTTGTATATAGTCCTCCAAGAAATGGTTCTACCCTTTGGGAAATTGGATTTCCAGATCGCACAGCTGCAGAATTCTATATCCCAGACCCTAACCCTAAATTCATCAACAAATTATACAAAGAACAACCTACAAACAAGTTTAGGCAATATGGACTGTGGGAACGTTATGCTGCTTTATATCCTCATAATGATCTAGTTTACACTGTTGGAGTTGATAGGTATGATCGAGACTGGTTTTTCGCTCATGTTACAAGGAGAATAGGAAATGGAGTATTTCAACCAACGACATGGCAAATTATATTTGAACTTAAAGACAATGCAATCAGAGGAAGTTATACTCTGCAGTTAGCCCTAGCGTCAGCCACTCATTCTCAATTGCAGATTTGGTTGAATGAGGAAGGTGATAATCCTGCACTATTTGAAAGAGTAAATATGGGAGAAGATAATGCAATAGCAAGGCATGGGATCCATGGATTATATTGGTTGTTCAGTATTGATATTCCAAGCGATCGTTTAGTGAAAGGAAGAAATACTATTTATTTAAGACAGTCAAATGCCACTAATCCTTTCCAGGGAGTTATGTATGACTATATTCGTTTAGAAAGACCTCCAACTCTAAATTAA 2010 0.4289 MKKQIFMLRWFGIMIMQLCFLLAGSSDDNISDSSAAVKLNAEDPEQVVIDNGIVQLTVSKPQGYVIGISYHGIDNVLETRHALHDRGYFDVVWNEPGKNSIAQRINGTHFSIVASDESQVEVSFVRTWTSSMQGTDVPINIDQRYVMRRGSSGFYSYAIFERPQSFPAVEVDQVRTVYKLQEHRFHYMAVSDNRQRFMPTMEDRESGQVLAYPEAVLLTLPSNEDFKGEVDDKYQYSCENKDNRVHGWISFDSKAPVGFWMITPSDEFRNAGPTKQDLTSHVGPITLSMFVSTHYGGKEVTMAFQEGETYKKVFGPVFVYLNSLSSNEDPHTLWPDAVQRMYKEARSWPYDFPHSRDFIPPTRRGSAIGRLIVQDRYNRGGRLLYGESAYVGLALPGSEGSWQRESKGYQFWTQADNKGYFMIKNVIPGHYNLFAWVPGFIGDYKHNNMITITSGSLIKLDSLVYSPPRNGSTLWEIGFPDRTAAEFYIPDPNPKFINKLYKEQPTNKFRQYGLWERYAALYPHNDLVYTVGVDRYDRDWFFAHVTRRIGNGVFQPTTWQIIFELKDNAIRGSYTLQLALASATHSQLQIWLNEEGDNPALFERVNMGEDNAIARHGIHGLYWLFSIDIPSDRLVKGRNTIYLRQSNATNPFQGVMYDYIRLERPPTLN 669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4996g00110 669 SUPERFAMILY Galactose mutarotase-like 42 325 IPR011013 GO:0003824|GO:0005975|GO:0030246
Pral4996g00110 669 Pfam Polysaccharide lyase family 4, domain II 387 459 IPR029413 -
Pral4996g00110 669 CDD RGL4_C 475 663 - -
Pral4996g00110 669 Pfam Rhamnogalacturonate lyase family 32 230 IPR010325 -
Pral4996g00110 669 Pfam Polysaccharide lyase family 4, domain III 473 662 IPR029411 -
Pral4996g00110 669 SUPERFAMILY Starch-binding domain-like 407 461 IPR013784 GO:0030246
Pral4996g00110 669 CDD RGL4_N 46 323 - -
Pral4996g00110 669 Gene3D - 470 663 - -
Pral4996g00110 669 SUPERFAMILY Galactose-binding domain-like 470 663 IPR008979 -
Pral4996g00110 669 CDD RGL4_M 363 463 IPR029413 -
Pral4996g00110 669 Gene3D - 385 461 - -
Pral4996g00110 669 Gene3D - 39 337 IPR014718 GO:0030246
Pral4996g00110 669 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 39 666 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4996g00110 Pral-Chr4996 414777 419752 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4996g00110 37 665 Polysaccharide Lyase AT1G09890 55.766 0.0 729
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4996g00110 K18195 - gmx:100776664 957.592