Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4996g00092 ATGAGCTTTGTGGGTTTTCCAGATATTCCTCCTTACAGCAGCAACGATTCTTCTAGAATGCCCTCTGGTGCAATCTCACAGCCTCGCCTTCTCACTTCTACTCCCGCAGCTAAAACCATGTTCAACTCTCCTGGCCTCTCACTTGCCCTTCAAACGGATATAGATGGGCACAGGGACGGAAATAGAATGTCTGAGAATTACGAGATGAATGTTAATGGAAGAAGAAGCAGAGAAGAAGAGCAAGAAAGCAGATCTGGAAGTGATAACCTGGAAGTTGCTTCCGGCGACGACCAAGATGCCTCCGATCACCCTCCCAGGAAAAAGCGCTATCACCGACACACCCCTCAACAGATACAAGAACTTGAAGCTTTGTTCAAGGAGTGTCCTCACCCGGATGAGAAGCAGAGATTGGAACTGAGCAAGAGGCTTTGTTTGGAAACAAGGCAAGTGAAATTTTGGTTCCAGAATAGAAGAACTCAGATGAAGACCCAATTGGAACGCCATGAGAACGCACTGCTCAGGCAAGAGAACGACAAGCTTAGAGCTGAGAACATGTCCATTAGGGACGCCATGAGGAACCCCATTTGCTCAAACTGTGGGGGACCAGCTATAATGGGAGAAATTTCACTGGAAGAACAGCATCTTCGGGTGGAAAATGCCCGGTTAAAGGACGAACTAGACCGGGTTTGTGCCCTCGCCGGCAAGTTCCTCGGCCGTCCGGCTTCTTCATATCCCAACTCAATGGCTCCTCCATTGGCGAACTCAAGTTTGGAGCTGGGAGTCGGAAGCAATGGCTTTGGCGGTATAAGCACTGTGACCGCAACATTGGCCATGGGGCCCGACCTGGGTGTGGGGATTTCTAGCCCTTTAGCCATGGGAACTCCTCCTCATGCTGCCCCGACTAGACCGGCCGTTCTTGAAAGATCAATAGAGAGGTCTATGTTTCTAGAGCTTGCTTTGGCTGCCATGGATGAATTGGTGAAGATGGCCCAGACTGATGAGCCTCTATGGATGAGGAGTCCGGAAGGTGGGAGAGAAATCCTGAGCCATGAGGAGTACTCAAGGACTTTCACGCCTTGCATCGGCGTAAAACCTAACGGCTTTGTCTCTGAAGCCTCAAGGGAGACTGGAATGGTCATCATAAACAGCTTGGCCCTCGTCGAAACATTGATGGACTCGAATCGTTGGGCAGAGATGTTTCCCTGTTTGGTTGCAAGAACTTCAACCACTGAAGTAATATCCGGCGGAATAAATGGAACCAGGAATGGTGCTCTTGAACTAATGCATGCTGAGCTGCAAGTTCTTTCGCCATTGGTGCCAGTTCGCGAGGTCCATTTCCTCCGCTTCTGCAAGCAGCATGCGGAGGGAGTGTGGGCTATTGTGGATGTTTCGGTTGATACTCTCCGGGAAAATTGTGGTGCGCCACACTTTGTGAATTGTAGGAGGCTTCCCTCAGGCTGTGTAGTTCAAGACATGCCTAATGGTTACTCTAAGGTGACATGGGTGGAGCACGCAGAATACGATGAAAGCCAAGTTCACGAGCTGTACAGACCCTTGTTAAGTTCAGGCTTGGGTTTTGGCGCGCAACGCTGGCTCGCCACCCTCCGGCGTCAATGCGAATGCCTCGCCATTCTAATGTCATCATCCGTTCCTTCACGAGACCATTCTGCGATTACCGCCGGCGGGCGGCGGAGCATGCTGAAGCTAGCGCAGCGCATGACCAACAACTTCTGCGCCGGCGTCTGTGCCTCGACGGTGCACAAGTGGAACAAGCTCAACGCCGGCAACGTTGGTGAGGATGTTCGGGTCATGACTCGCAAGAGCGTCGACGACCCAGGAGAACCGCCGGGGATCGTGCTGAGCGCTGCAACGTCTGTGTGGCTGCCGGTGTCGCCGCCGCGACTGTTTGATTTCCTCCGTGACGAAAGGCTCCGGAGCGAGTGGGACATACTGTCGAACGGTGGGCCCATGCAGGAGATGGCCCACATCGCCAAGGGCCAGGACCACGGCAACTGCGTCTCCCTCCTCAGATCCAGCTGGTGTGGTTGA 2049 0.5286 MSFVGFPDIPPYSSNDSSRMPSGAISQPRLLTSTPAAKTMFNSPGLSLALQTDIDGHRDGNRMSENYEMNVNGRRSREEEQESRSGSDNLEVASGDDQDASDHPPRKKRYHRHTPQQIQELEALFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERHENALLRQENDKLRAENMSIRDAMRNPICSNCGGPAIMGEISLEEQHLRVENARLKDELDRVCALAGKFLGRPASSYPNSMAPPLANSSLELGVGSNGFGGISTVTATLAMGPDLGVGISSPLAMGTPPHAAPTRPAVLERSIERSMFLELALAAMDELVKMAQTDEPLWMRSPEGGREILSHEEYSRTFTPCIGVKPNGFVSEASRETGMVIINSLALVETLMDSNRWAEMFPCLVARTSTTEVISGGINGTRNGALELMHAELQVLSPLVPVREVHFLRFCKQHAEGVWAIVDVSVDTLRENCGAPHFVNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDESQVHELYRPLLSSGLGFGAQRWLATLRRQCECLAILMSSSVPSRDHSAITAGGRRSMLKLAQRMTNNFCAGVCASTVHKWNKLNAGNVGEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPPRLFDFLRDERLRSEWDILSNGGPMQEMAHIAKGQDHGNCVSLLRSSWCG 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4996g00092 682 MobiDBLite consensus disorder prediction 1 42 - -
Pral4996g00092 682 MobiDBLite consensus disorder prediction 71 86 - -
Pral4996g00092 682 SMART START_1 317 541 IPR002913 GO:0008289
Pral4996g00092 682 Pfam Homeodomain 107 162 IPR001356 GO:0003677
Pral4996g00092 682 Gene3D - 93 180 - -
Pral4996g00092 682 SUPERFAMILY Homeodomain-like 93 164 IPR009057 -
Pral4996g00092 682 FunFam Homeobox-leucine zipper protein GLABRA 2 317 540 - -
Pral4996g00092 682 Coils Coil 158 190 - -
Pral4996g00092 682 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 103 678 IPR042160 -
Pral4996g00092 682 ProSitePatterns 'Homeobox' domain signature. 139 162 IPR017970 GO:0000981|GO:0006355
Pral4996g00092 682 ProSiteProfiles START domain profile. 308 544 IPR002913 GO:0008289
Pral4996g00092 682 SUPERFAMILY Bet v1-like 310 541 - -
Pral4996g00092 682 Gene3D - 380 536 IPR023393 -
Pral4996g00092 682 Pfam START domain 317 541 IPR002913 GO:0008289
Pral4996g00092 682 MobiDBLite consensus disorder prediction 55 114 - -
Pral4996g00092 682 CDD homeodomain 106 164 IPR001356 GO:0003677
Pral4996g00092 682 SMART HOX_1 105 168 IPR001356 GO:0003677
Pral4996g00092 682 MobiDBLite consensus disorder prediction 11 42 - -
Pral4996g00092 682 FunFam Homeobox-leucine zipper protein HDG1 94 180 - -
Pral4996g00092 682 SUPERFAMILY Bet v1-like 562 677 - -
Pral4996g00092 682 ProSiteProfiles 'Homeobox' domain profile. 104 164 IPR001356 GO:0003677
Pral4996g00092 682 CDD START_ArGLABRA2_like 312 540 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4996g00092 Pral-Chr4996 334113 339639 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4996g00092 35 679 Homeobox Transcription Factor Family AT3G61150 65.639 0.0 855
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Pral4996g00092 START 7.6e-57 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4996g00092 K09338 - qsa:O6P43_017565 1144.41