Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4996g00081 ATGGTACGAGGGAAGACCCAGATGAAGCGTATAGAGAACGCCACGAGCAGGCAAGTGACCTTCTCAAAGCGCCGTAATGGGCTGCTCAAGAAGGCCTTTGAACTCTCAGTGCTTTGTGATGCCGAGGTTGCCCTCATCATCTTCTCTCCCAGAGGCAAGCTTTATGAATTTGCTAGCTCCAGCTTGCACGAGACTATTGAACGCTACCGCAAGCATACCAGGGATGCTCAAACAGCCAACAGATCGAGTGAACAAAATATGCAGCATTTGAAGCAAGAAGCAGCAAGCATGATGAAGAAAATTGAGCATCTTGAGCTCTCAAAAAGGAAACTCTTGGGGGAGGGTTTAGGGTCATGCTCCATACAAGAGTTAAATCAGATAGAACAACAGTTGGAGAAGAGTGTGAGCACCATTCGAGCAAGAAAGAATCAGGTTTACAACGAACAAATCGAGCAACTAATAGCAAAGGAAAAAGCCTTAGAAGCTGAAAATGCAAGGCTCTATGAGAAGTGTGGTATACAGCCACAGCAAGAAACAAATGGTGAGCAGCAGAGAGAAAGCCAACCCTATGCAGAAAGCAGTCCAAGTTCGGAGGTGGAAACTGAGCTATTCATTGGATTACCAGAAACCAGAGCAAGACGAAGCATTTTGCCTCCTCTACCTCCAAGGTCTAGTTGA 678 0.4617 MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFASSSLHETIERYRKHTRDAQTANRSSEQNMQHLKQEAASMMKKIEHLELSKRKLLGEGLGSCSIQELNQIEQQLEKSVSTIRARKNQVYNEQIEQLIAKEKALEAENARLYEKCGIQPQQETNGEQQRESQPYAESSPSSEVETELFIGLPETRARRSILPPLPPRSS 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4996g00081 225 Coils Coil 121 141 - -
Pral4996g00081 225 MobiDBLite consensus disorder prediction 174 225 - -
Pral4996g00081 225 CDD MADS_MEF2_like 3 78 IPR033896 GO:0000977|GO:0045944
Pral4996g00081 225 MobiDBLite consensus disorder prediction 174 200 - -
Pral4996g00081 225 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pral4996g00081 225 Pfam K-box region 83 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pral4996g00081 225 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Pral4996g00081 225 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pral4996g00081 225 Gene3D - 14 96 IPR036879 GO:0003677|GO:0046983
Pral4996g00081 225 Coils Coil 143 170 - -
Pral4996g00081 225 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pral4996g00081 225 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pral4996g00081 225 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pral4996g00081 225 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 180 - -
Pral4996g00081 225 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Pral4996g00081 225 SUPERFAMILY SRF-like 3 80 IPR036879 GO:0003677|GO:0046983
Pral4996g00081 225 Coils Coil 73 107 - -
Pral4996g00081 225 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Pral4996g00081 225 FunFam MADS-box protein SOC1 14 95 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4996g00081 Pral-Chr4996 272566 282012 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4996g00081 1 158 MADS-box Gene Family AT2G45660 78.481 1.05e-86 252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Pral4996g00081 K-box 2e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4996g00081 - - cave:132186361 323.168