Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4996g00078 ATGGTACGAGGGAAGACCCAGATGAAGCGTATAGAGAACGCCACGAGCAGGCAAGTGACCTTCTCAAAGCGCCGTAATGGGCTGCTCAAGAAGGCCTTTGAACTCTCAGTGCTTTGTGATGCCGAGGTTGCCCTCATCATCTTCTCTCCCAGAGGCAAGCTTTATGAATTTGCTAGCTCCAGCAGCTTGCACGAGACTATTGAACGCTACCGCAAGCATACCAGGGATGCTCAAACAGCCAACAGATCGAGTGAACAAAATATGCAGCATTTGAAGCAAGAAGCAGCAAGCATGATGAAGAAAATTGAGCATCTTGAGCTCTCAAAAAGGAAACTCTTGGGGGAGGGTTTAGGGTCATGCTCCATACAAGAGTTAAATCAGATAGAACAACAGTTGGAGAAGAGTGTGAGCACCATTCGAGCAAGAAAGAATCAGGTTTACAACGAACAAATCGAGCAACTAATAGCAAAGGAAAAAGCCTTAGAAGCTGAAAATGCAAGGCTCTATGAGAAGTGTGGTATACAGCCACAGCAAGAAACAAATGGTGAGCAGCAGAGAGAAAGCCAACCCTATGCAGAAAGCAGTCCAAGTTCGGAGGTGGAAACTGAGCTATTCATTGGATTACCAGAAACCAGAGCAAGACGAAGCATTTTGCCTCCTCTACCTCCAAGGTCTAGTTGA 681 0.4626 MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFASSSSLHETIERYRKHTRDAQTANRSSEQNMQHLKQEAASMMKKIEHLELSKRKLLGEGLGSCSIQELNQIEQQLEKSVSTIRARKNQVYNEQIEQLIAKEKALEAENARLYEKCGIQPQQETNGEQQRESQPYAESSPSSEVETELFIGLPETRARRSILPPLPPRSS 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4996g00078 226 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pral4996g00078 226 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pral4996g00078 226 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pral4996g00078 226 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Pral4996g00078 226 Coils Coil 144 171 - -
Pral4996g00078 226 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 181 - -
Pral4996g00078 226 FunFam MADS-box protein SOC1 14 96 - -
Pral4996g00078 226 Gene3D - 14 97 IPR036879 GO:0003677|GO:0046983
Pral4996g00078 226 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pral4996g00078 226 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Pral4996g00078 226 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pral4996g00078 226 SUPERFAMILY SRF-like 3 81 IPR036879 GO:0003677|GO:0046983
Pral4996g00078 226 Coils Coil 74 108 - -
Pral4996g00078 226 CDD MADS_MEF2_like 3 79 IPR033896 GO:0000977|GO:0045944
Pral4996g00078 226 Pfam K-box region 84 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pral4996g00078 226 Coils Coil 122 142 - -
Pral4996g00078 226 MobiDBLite consensus disorder prediction 175 226 - -
Pral4996g00078 226 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Pral4996g00078 226 MobiDBLite consensus disorder prediction 175 201 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4996g00078 Pral-Chr4996 272565 282012 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4996g00078 1 159 MADS-box Gene Family AT2G45660 77.987 6.90e-85 247
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Pral4996g00078 K-box 2e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4996g00078 - - cave:132186361 318.546