Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4996g00053 ATGGGGGTGGGGGGACACTTCTGGGATTTGCTAAAGCCATATGCACGAGCCGAAGGTTTTGATTTCTTGAGGGACAAGCGAGTCGCTGTGGACCTCTCCTTCTGGATTATCCAGCATCAGACTGCTATTAAGGCCCATGCTCGGAAACCTCATCTACGACTTACCTTCTTCCGCACCATCAATCTCTTCTCCAAGTTTGGAGCATATCCAGTCTTTGTGGCAGATGGGACCCCTTCGCCGTTGAAATCACATGCTAGGATTTCAAGATTTTTCCGTTTTTCTGGCATTGAACTAAAAGATTTTCCGGTGGATGAAGACAGTGTTCCCGTTGAGAGGAACCGTGAATTTTCAAGGCATGTTCAGGAATGTCTCGAACTTGTGGAGTTACTTGGAATGCCTGTACTATATGCTAAAGGAGAGGCAGAAGCACTCTGTGCCCAATTAAATAGTGAAGGTTACGTAGATGCTTGCATCACATCTGACAGTGATGCATTCCTATATGGTGCGAAATGCGTTATAAAAAGCTTCTGCTCTAATGCCAAAGAAGCTTTTGAATGCTACAATATCGAAGATATTGAAGCTGGCCTTGGGTTGAAGAGGAGACACCTCATAGCTATCTCTCTTCTCGTTGGAAATGATTATGATTTAAATGGTGTTCGGGGGATTGGGCTTGATACGGCTCTTCGTTTTGTTAGATGTTTCGGTGAAGAAGATGTGTTGAATAGATTGCAAGATATTGGCAATGGGAAAGTTTCGTCAGCTCCCACCAACATTAAATCTGCTGAAAATTGTGTTGACATGGAGGGGAACTTTCCAAGCCGAAAACAGCTTCATTGTTCCTTTTGTGGGCATCCGGGCAGCAAAAGAGATCATATGAAATCTTCTTGTGAATTTTGCATAACAAGTGATGATGAAGGTTGCTTGAGAAAACCAGAGGGTTTTACCTGTGGTTGCCCTTCCTGTGATATGGTTAGTAAACGAAAGGGGCAGAGAAGGAGGGAAAATTGGTACACAATTTGTCTCAAAATTGCACAAGAGCTCAAATTTCCCAGAGACGAAATAATTGAAATGTATTTATGTAAAGACAGTGGTTGCCTTCCTGCAAGTGATGATCCTTGCATCTCATGGGGCAAACCCAAGATTGAGATGCTGATAGATTTTTTAAACTTTCATCAGCATTGGGATCCATCTTACATTCGACGACAGCTATTTCCTATGATGTCTACTATCTTTTTGAGAGACATGGCTAATGCTCCTGTAGAAAGTTTGGTACTTGGGACATTCGAGCTTGATTCAATACAGCGTGTGAAGATAAGATATGGATATCAATCTTATGTTGTCAAGTGGAAATGTGCAGTTGGCAACGTTAGCTGTACAGTTCCATCTCATGACTCTAGCATGCAGCAAGCAGATGGTAGTGAGCATGATGAATTTGTGGATCTACTAGATGATTCTAGTATTTCTGATATGGGTGATGGGTGTAGCTTCCTGCTGACAGATGAAAATATGGATCTTGTGAGGGCTGCTTTTCCAGCAAAAGTTGAAAGGTTTTGGCAAGAGCAGGAACTGAAGGGATCAAAAATAAGAAAGGCTTCTACCCCACGATCTCTAGAGAAGGAGAGTTCATCATTAAAAACAAGTAGTATTCAACAAAGCATTACAAAGTTCTACCGCTCAGTGAAAACGCAAGATCATTCAAAACAGGAAGCTGCATCTGATAGCTTTGATGACCTTGACTGTGGGACCTTAAAAGGCAAAAGAACAATGTCCAGTCCAAATCTTACGAAATCAGCAAGGCGTCGCCTTTTATTTAAGTAG 1818 0.4219 MGVGGHFWDLLKPYARAEGFDFLRDKRVAVDLSFWIIQHQTAIKAHARKPHLRLTFFRTINLFSKFGAYPVFVADGTPSPLKSHARISRFFRFSGIELKDFPVDEDSVPVERNREFSRHVQECLELVELLGMPVLYAKGEAEALCAQLNSEGYVDACITSDSDAFLYGAKCVIKSFCSNAKEAFECYNIEDIEAGLGLKRRHLIAISLLVGNDYDLNGVRGIGLDTALRFVRCFGEEDVLNRLQDIGNGKVSSAPTNIKSAENCVDMEGNFPSRKQLHCSFCGHPGSKRDHMKSSCEFCITSDDEGCLRKPEGFTCGCPSCDMVSKRKGQRRRENWYTKXCLKIAQELKFPRDEIIEMYLCKDSGCLPASDDPCISWGKPKIEMLIDFLNFHQHWDPSYIRRQLFPMMSTIFLRDMANAPVESLVLGTFELDSIQRVKIRYGYQSYVVKWKCAVGNVSCTVPSHDSSMQQADGSEHDEFVDLLDDSSISDMGDGCSFLLTDENMDLVRAAFPAKVERFWQEQELKGSKIRKASTPRSLEKESSSLKTSSIQQSITKFYRSVKTQDHSKQEAASDSFDDLDCGTLKGKRTMSSPNLTKSARRRLLFK 606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4996g00053 606 FunFam Flap endonuclease GEN-like 1 2 197 - -
Pral4996g00053 606 FunFam Flap endonuclease GEN-like 1 198 256 - -
Pral4996g00053 606 Gene3D - 2 197 - -
Pral4996g00053 606 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 70 89 IPR006084 -
Pral4996g00053 606 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 148 168 IPR006084 -
Pral4996g00053 606 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 203 218 IPR006084 -
Pral4996g00053 606 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 127 144 IPR006084 -
Pral4996g00053 606 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 25 39 IPR006084 -
Pral4996g00053 606 SUPERFAMILY PIN domain-like 6 213 IPR029060 -
Pral4996g00053 606 CDD PIN_GEN1 2 202 - -
Pral4996g00053 606 Pfam XPG N-terminal domain 1 86 IPR006085 GO:0004518
Pral4996g00053 606 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 198 415 IPR036279 -
Pral4996g00053 606 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 1 544 IPR006084 -
Pral4996g00053 606 SMART xpgn3 1 96 IPR006085 GO:0004518
Pral4996g00053 606 SMART xpgineu 128 198 IPR006086 GO:0004518
Pral4996g00053 606 Gene3D - 198 263 - -
Pral4996g00053 606 Pfam XPG I-region 131 213 IPR006086 GO:0004518
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4996g00053 Pral-Chr4996 162376 167149 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4996g00053 16 331 Core DNA Replication Machinery Family AT5G26680 24.786 8.74e-17 81.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4996g00053 K15338 - gmx:100779848 787.334