Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4996g00039 ATGTTGGGCTCAAACACCAATTTGGTGACCACGGTAATTGGATTTGGCATGAGTGCGACTTTTATTGTGTTTGTCTGTACAAGAATAATCTGTGGAAGGCTGCGAGGGTCCTCGGAATCTCATAATATGTTTGAATTTGAACCTAGGATGGACATAGAACAGCCAGAACATCTTGTTAACCGCTCAGAACCTGTTCTTGTTACTGCAATTCCCACCATGAAGTTCAACCGAGAGGCTTTCAGTTCTAGTGAAAATACACAGTGTGTGATCTGTTTGGCAGAGTACAAAGAAAGAGAGGTACTGCGCATCATGCCAAAATGTGGTCATAGCTTCCATCTTTCCTGTATTGATATGTGGCTGAGGAAACAATCCACCTGCCCGGTATGCCGTCTTCCATTGCAGAATTCTTCTGAAACAAAGCATATGAGACCGGTAACGTTTAGCTTAGGGCAAGGTGACTCTCAGACTTCTGAAAGTGGAGATATTGAGAGGAATACTGAACCTGTGCCGGGGAATCCCTTGTCCTTAGAGGAATCAGATGCGGCAGAAGCGGAAACAAGGCAATGA 567 0.4462 MLGSNTNLVTTVIGFGMSATFIVFVCTRIICGRLRGSSESHNMFEFEPRMDIEQPEHLVNRSEPVLVTAIPTMKFNREAFSSSENTQCVICLAEYKEREVLRIMPKCGHSFHLSCIDMWLRKQSTCPVCRLPLQNSSETKHMRPVTFSLGQGDSQTSESGDIERNTEPVPGNPLSLEESDAAEAETRQ 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4996g00039 188 SUPERFAMILY RING/U-box 79 136 - -
Pral4996g00039 188 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 64 140 IPR013083 -
Pral4996g00039 188 SMART ring_2 88 129 IPR001841 -
Pral4996g00039 188 ProSiteProfiles Zinc finger RING-type profile. 88 130 IPR001841 -
Pral4996g00039 188 MobiDBLite consensus disorder prediction 140 188 - -
Pral4996g00039 188 Pfam Ring finger domain 87 130 IPR001841 -
Pral4996g00039 188 CDD RING-H2_EL5-like 87 130 - -
Pral4996g00039 188 FunFam Putative RING zinc finger domain superfamily protein 64 136 - -
Pral4996g00039 188 MobiDBLite consensus disorder prediction 140 163 - -
Pral4996g00039 188 PANTHER OS11G0150450 PROTEIN 1 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4996g00039 Pral-Chr4996 123399 125576 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4996g00039 8 160 C3H Transcription Factor Family AT1G72220 30.000 1.13e-19 83.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4996g00039 - - gmx:100790202 272.707