Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4996g00033 ATGAGGCCCGTCTTTTGTGGAAACCTGGATTTCGATGCGCGCCAGTCTGATGTTGAGAGACTCTTCAGAAGATATGGGAAAGTTGACAGAGTGGACTTGAAGTCTGGGTTTGCTTTTGTTTACATGGAAGATGAACGTGATGCTGAGTATGCAATTAGAAGACTTGATAGAACAGAGTTTGGTAGAAAGGGGCGCCGAATACGTGTCGAGTGGACTAAGCAAGAACGTGATAGCAGAAGGTCAGGTGATTCAAGAAGATCTTCAACTAATATGAGACCATCGAAGACATTGTTTGTCATTAATTTTGATCCTGTTCACACGAGGACAAGGGATCTAGAGAGGCACTTTGATGCATATGGGAAAATATTGAATATAAGGATAAGAAGGAATTTTGCTTTTGTTCAGTATGAATCCCTGGAGGATGCCACTAGAGCATTGGAGGCAACTAACATGAGCAAGTTGTTGGATCGGGTTATTACAGTGGAGTATGCAATTAGAGATGATGATGATGATAGAAGAAATGGATACAGTCCTGATAGGAGAGGCCGAGACATATCCCCTGATGGGAGGTATGGTCGTGGTAGATCACTTAGCCCTTATCGCAGAGGTAGGGGTAGCCCAGACTATGGCCATGGATCAAATCCGACTTCCAGAGCAGAACCAAGAGGAAGCCCCAAGTATGAACGGAATGAGAGCCCATTAAATGGAAGATATGACAGCCGATCACCACCACCCCGCCGTGAGTCCCGTTCCCCAGGAGAGGTTGAATAG 771 0.454 MRPVFCGNLDFDARQSDVERLFRRYGKVDRVDLKSGFAFVYMEDERDAEYAIRRLDRTEFGRKGRRIRVEWTKQERDSRRSGDSRRSSTNMRPSKTLFVINFDPVHTRTRDLERHFDAYGKILNIRIRRNFAFVQYESLEDATRALEATNMSKLLDRVITVEYAIRDDDDDRRNGYSPDRRGRDISPDGRYGRGRSLSPYRRGRGSPDYGHGSNPTSRAEPRGSPKYERNESPLNGRYDSRSPPPRRESRSPGEVE 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4996g00033 256 FunFam Serine/arginine-rich splicing factor RS31 87 178 - -
Pral4996g00033 256 SUPERFAMILY RNA-binding domain, RBD 88 195 IPR035979 GO:0003676
Pral4996g00033 256 MobiDBLite consensus disorder prediction 222 256 - -
Pral4996g00033 256 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 74 IPR000504 GO:0003723
Pral4996g00033 256 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 95 166 IPR000504 GO:0003723
Pral4996g00033 256 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 96 246 - -
Pral4996g00033 256 SMART rrm1_1 96 162 IPR000504 GO:0003723
Pral4996g00033 256 SMART rrm1_1 3 70 IPR000504 GO:0003723
Pral4996g00033 256 FunFam Serine/arginine-rich splicing factor RS31 1 85 - -
Pral4996g00033 256 SUPERFAMILY RNA-binding domain, RBD 4 89 IPR035979 GO:0003676
Pral4996g00033 256 MobiDBLite consensus disorder prediction 168 190 - -
Pral4996g00033 256 Gene3D - 89 176 IPR012677 -
Pral4996g00033 256 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 97 159 IPR000504 GO:0003723
Pral4996g00033 256 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 63 IPR000504 GO:0003723
Pral4996g00033 256 Gene3D - 1 88 IPR012677 -
Pral4996g00033 256 MobiDBLite consensus disorder prediction 168 256 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4996g00033 Pral-Chr4996 108777 112900 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4996g00033 4 161 Eukaryotic Initiation Factors Gene Family AT4G34110 26.012 1.14e-09 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4996g00033 K12893 - gmx:100797778 432.565