Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4983g00012 ATGGAGATATCCTTGTTAAAGGTTCTTATTAATGGCATATCCTCATTTTTGAATCTATCTTTTTCTGGGAATGGGAACTCAGAATTTGTTTCAAAGTATTACCAAAAGGTGGAGGAGACACTTAAGTTCCTCAAGCCTATAGCTGATGCTTTGGTTAATTCTGAATTAGCGTCTGATGAAGTGCTTAACAAGGAATGTGAAGAAGCAGGTCAGGCTGTTGATGAGTTGAGGGAGCTTTTCGGGAATTGGCACCCATTGTCTAGCAAAGTTTACTTTGTTATGCAAGTTGAATCGTTGCTATCTAGGATTCAGACTTCAGCACTCCATATTTTCCAGCAGCTGAAGACTTCTCATCTCAGTCTTCCAGACGAACTGAATACTGTACAAGTCGAGCACTGTATTGCTAAACTTAAGCTTTTGGGACATGAGGATGAAATCCTGTCAATCATTAAAGAAGCTATTAGCGAACAAGTGGAAGGTGCAGGACCTAGTTCAGAGGTCCTAGCAAACCTTGCTGAGAGCTTGAGCCTGAGGTCTAACGAAGAGATTCTGATTGAGGCTGTAGCCCTTGAAAAGTTGAAGGAGATTGCTGAACAGGCTGAAAAATCTGCTGAAGCTGAGTATATTGATCAATTGATTACTCTTGTAACTCGTATGCATGAGCGTCTTGTTGCGCTTAAGCAAGCCCAGAGCTGTAGCCCAGTTGCAGTACCTCCTGATTTTTGCTGTCCTCTTTCTTTGGAGTTGATGATGGATCCGGTAATTGTGGCTTCAGGGCAAACTTATGAGCGGGCTTTCATCAAGAACTGGATTGATTTGGGACTTACTGTCTGTCCTAAGACACGTCAGACCTTGGCTCACACCAACTTAATACCTAACTACACTGTAAAGGCATTAATTGCAAACTGGTGTGAATCAAACAATGTGAAGCCAGTTGATCCCATAGTGTCCACAAACTTAAATCAATCATCTTTTCTTAATGGGTACGTGGAATCTGGTGCAAACAGGGAATCACCTGTTTTTGCTCATTCTAGGACCAATCTTCCATCCTCTCCAGAGGCAGTTCGCTCTCATTCTTTCAGCTCACCGAGTAAGAGCTTAACCTCTGGAGGAATCCACAGAGAGGGAACATCACCATTTCATCCCCGTTCAACTTCAGAAGGTTCCATAAGTGGCATGGCTAATGGGCAGTGTTTGGATTTTGCAAGAACATCACCCCCGGGTTCTGATGATAGGTCTGCTGGCTCAGATGAGAGGAGTGAGGATTCAGGTGTCCAACCGTCAACGTCTCAATCTATAACTGAATCTTCCAATGCCTATAGCTCTGAACAATCCCAAGCCCATGTTAGAGCAGCTTCTGATTCCAGTGCCCTAGCCAGTGTTCAAGGAACACAAGGTGATGGTCACAGTACTCCCCAGATGTCAACCACTGCTGGCAACAGCAAGGATGTTTCTGTAGGGGTGAATTCTGGGATAGATGCTAATGGTGGTGCAGCTATCGGTGCTCCCCAGAGAGAACCTGAGATCTCACCCCGTGTGGAGACAAGGCCTCGAAACCAAAGTATATGGCGGCGGCCATCAGAAAGATTTGTTCCTAGGGTTGTGCCCTCTGCTGGCGAAACAAGAGCTGATCTTTCTGCTCTTGAAGTCCAGGTTAAGAGTCTGGTTGAGGACTTGAAGAGCGCTTCTCTTGATACTCAAAGGGAGGCAACATCAAGGCTCCGCCTTCTTGCTAAGCACAATATGGATAATAGACTTGTGATTGCAAACTGTGGAGCCATTGACTTGTTGGTTGACTTACTTAAATCAGCTGATACAACAATCCAGGAAAATTCTGTCACAGCACTTCTGAACTTATCAATCAATGACAACAACAAAAGTGCAATTGCAAATGCTGGTGCAATTGATCCTCTAATCCATGTGCTTGAGACCGGGAGCTCTGAAGCCAAGGAGAATTCAGCTGCCACTCTCTTCAGCTTATCAGTGATTGAAGAAAACAAGATCAGGATAGGGAGGTCTGGGGCAATTAGGCCTCTGGTTGATTTATTAGGCAATGGGACTCCAAGAGGAAAGAAAGATGCTGCCACTGCTTTGTTTAACTTGTCAATTTATCATGAAAACAAGGGCCGCATCGTGCAAGCTGGAGCCGTGAAGCACCTTGTGGAATTAATGGATCCGGCGGCTGGAATGGTTGATAAGGCAGTGGCTGTCCTAGCAAACCTTGCCACGATTCAAGAAGGAAGAACTGCCATTGGCAGTGAAGGTGGGATCCCTGTTTTAGTCGAGGTGGTCGAGTTGGGTTCAGCAAGAGGAAAGGAGAATGCAGCGGCAGCTCTACTACATCTTTGCTCAAACAATCCTCGATATTTGGGCACAGTGCTTCAAGAAGGAGCTGTCCCACCATTAGTAGCTTTGTCACAATCAGGCACCCCAAGGGCTAAAGAAAAGGCCCAGACTCTCCTCAACCAAATTAGAAATCAAAGACACAATGCTGGGAGATGA 2502 0.4528 MEISLLKVLINGISSFLNLSFSGNGNSEFVSKYYQKVEETLKFLKPIADALVNSELASDEVLNKECEEAGQAVDELRELFGNWHPLSSKVYFVMQVESLLSRIQTSALHIFQQLKTSHLSLPDELNTVQVEHCIAKLKLLGHEDEILSIIKEAISEQVEGAGPSSEVLANLAESLSLRSNEEILIEAVALEKLKEIAEQAEKSAEAEYIDQLITLVTRMHERLVALKQAQSCSPVAVPPDFCCPLSLELMMDPVIVASGQTYERAFIKNWIDLGLTVCPKTRQTLAHTNLIPNYTVKALIANWCESNNVKPVDPIVSTNLNQSSFLNGYVESGANRESPVFAHSRTNLPSSPEAVRSHSFSSPSKSLTSGGIHREGTSPFHPRSTSEGSISGMANGQCLDFARTSPPGSDDRSAGSDERSEDSGVQPSTSQSITESSNAYSSEQSQAHVRAASDSSALASVQGTQGDGHSTPQMSTTAGNSKDVSVGVNSGIDANGGAAIGAPQREPEISPRVETRPRNQSIWRRPSERFVPRVVPSAGETRADLSALEVQVKSLVEDLKSASLDTQREATSRLRLLAKHNMDNRLVIANCGAIDLLVDLLKSADTTIQENSVTALLNLSINDNNKSAIANAGAIDPLIHVLETGSSEAKENSAATLFSLSVIEENKIRIGRSGAIRPLVDLLGNGTPRGKKDAATALFNLSIYHENKGRIVQAGAVKHLVELMDPAAGMVDKAVAVLANLATIQEGRTAIGSEGGIPVLVEVVELGSARGKENAAAALLHLCSNNPRYLGTVLQEGAVPPLVALSQSGTPRAKEKAQTLLNQIRNQRHNAGR 833
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4983g00012 833 SMART Ubox_2 240 303 IPR003613 GO:0004842|GO:0016567
Pral4983g00012 833 SUPERFAMILY ARM repeat 552 824 IPR016024 -
Pral4983g00012 833 PANTHER U BOX DOMAIN-CONTAINING 31 823 - -
Pral4983g00012 833 Gene3D - 533 624 IPR011989 -
Pral4983g00012 833 ProSiteProfiles U-box domain profile. 236 310 IPR003613 GO:0004842|GO:0016567
Pral4983g00012 833 Gene3D - 728 832 IPR011989 -
Pral4983g00012 833 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 674 716 IPR000225 GO:0005515
Pral4983g00012 833 Coils Coil 545 565 - -
Pral4983g00012 833 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 236 310 IPR013083 -
Pral4983g00012 833 MobiDBLite consensus disorder prediction 420 488 - -
Pral4983g00012 833 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 592 634 IPR000225 GO:0005515
Pral4983g00012 833 MobiDBLite consensus disorder prediction 342 519 - -
Pral4983g00012 833 Gene3D - 625 727 IPR011989 -
Pral4983g00012 833 Coils Coil 180 210 - -
Pral4983g00012 833 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 715 756 IPR000225 GO:0005515
Pral4983g00012 833 FunFam RING-type E3 ubiquitin transferase 236 311 - -
Pral4983g00012 833 FunFam RING-type E3 ubiquitin transferase 536 830 - -
Pral4983g00012 833 SMART arm_5 622 662 IPR000225 GO:0005515
Pral4983g00012 833 SMART arm_5 581 621 IPR000225 GO:0005515
Pral4983g00012 833 SMART arm_5 704 743 IPR000225 GO:0005515
Pral4983g00012 833 SMART arm_5 744 784 IPR000225 GO:0005515
Pral4983g00012 833 SMART arm_5 785 826 IPR000225 GO:0005515
Pral4983g00012 833 SMART arm_5 663 703 IPR000225 GO:0005515
Pral4983g00012 833 Pfam Armadillo/beta-catenin-like repeat 665 702 IPR000225 GO:0005515
Pral4983g00012 833 Pfam Armadillo/beta-catenin-like repeat 622 661 IPR000225 GO:0005515
Pral4983g00012 833 Pfam Armadillo/beta-catenin-like repeat 583 620 IPR000225 GO:0005515
Pral4983g00012 833 CDD RING-Ubox_PUB 238 290 IPR045210 -
Pral4983g00012 833 MobiDBLite consensus disorder prediction 342 393 - -
Pral4983g00012 833 Pfam U-box domain 237 307 IPR003613 GO:0004842|GO:0016567
Pral4983g00012 833 SUPERFAMILY RING/U-box 230 313 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4983g00012 Pral-Chr4983 36324 41592 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4983g00012 196 833 U-box Gene Family AT2G23140 60.863 0.0 699
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4983g00012 - - gmx:100811250 1183.7