Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4981g00061 ATGGGGTCCGAGGTTTGTGTCGGTGTTTCTGGTGGGTCGGCCACTGCTCATGAGTGGAAGAAGGGGTGGACTCTTTCATCTGGTGGATTCGCCCAATTTTGTAATAACTGCGGAATTTCGACCGAGTGCAAGCTTGACACCCTTGATTCCATATCTGCCTATGAGGCATCCATTTTCTGTAGTAAATTCCATCGTGAACAAACTGGTTGGAGGGACTGCAGCTTTTGTAACAAGATATCAAATCTATTTGACCTGGTTTGGCAGCCTATCCACAGTGGATGCATAGTATCTAGGTATTTGTTCGACTACCTTGACTTTGGAGGTATAGGTTGCATCAGTTGTGTAAAGGCTTCTCGTTCGCATTTGAACACAAAAGAACCTAAAGGTGCTGTTACACCGACCACAACAAATGCAAGTGATTGTCGTCCTCATCACATTGATGGGAAACTGTTGGTGGATAATGTTGATGAAGGAAAACTTATGCAGTTCTGCAGAATTGTTGAAGCTAGTGAGACTAATGGTTTGCATCAGCCTCAAAGAGATAAAATGATTTCATCTAGTGGGTTGAAGAGCCAAGATATTAAGTGTCTAACAAGGGATATGGATTCAGGATTTTCAAATATGCTTACAACATCGATTCGGTCACTAAAATTTCCTTTATTAGAAAATAATAGACCAACATGGGAGATTAAAAATATGCTTGAACCGCCTGCACAACCATCTTTGAGTATGTCCCTGGGAATTCCATCAGGAAACTTTGCCCTTGCTTCTGCTAGAGAAATTGCAGAAGAAAAGCTTGAGGGCAAACCTTCTTCTCTGTTTCATCAAGGACAGAGATCTCCCCCTGTATTTGCTAAACCATCAAAGACTGGCCTTACCATGAACATAGAAACAAATAAAGGAATGAATTCTATTTCTCAGGCCCATCTTGCCCGGCCACCTGTTGAAGGAAGGGGCAAGAGCCAGCTACTTCCTCGGTACTGGCCTAGGATTACTGATGAAGAGCTGGAGCAATTGTCTGGAAATTTGAAATCCACTGTGGTGCCATTATTTGAGAAGGTGCTGAGTGCCAGTGATGCAGGTCGAATTGGTCGCCTTGTTCTTCCAAAAGCTTGTGCTGAAGCTTTTTTCCCTCCTATTTCACAATCAGAAGGTCTTCCTTTGGAAATGCAAGATGTGAAGGGGAATGAATGGACGTTTCAATTCAGATTTTGGCCTAATAACAACAGTAGGATGTACGTGTTGGAGGGTGTGACCCCTTGCATACAGTCAATGCAATTGATTGCGGGTGATACTGTGACATTTAGCAGGATAGATCCTGGGGGCAGACTTATTATGGGTTTCAGAAAGACATCAAATGCTCTAGAAAGTCAGGATGTGTCTACATCTGCGCATTCTAATGGGATTACAGCAAAGGAAACAGCCATTTCTGGTGCAAGGGAGAGCCTGCCGTCAGGAAGTAGTTATTCTGATCTTCTTCAGTCTGTGGAAGGGAACAGCGAGCCTCACTTAAATAGACAATCAGAACACCTGCATTTAGGTAACAGGGTAGCTGATTTTCCTCAAACGGAAATTTCTGGCCAGATGATGAAAAATGATTCCCTGCAGCAATCAGTTTCAGTTTCAGATAGGAAAAGGACTCGGAACATTGGGCCTAAAAATAAGAGGTTGCGCATTAATTGTGAAGATGCTTTGGAGTTGAGACTAACGTGGGAGGAAGCACAAGACTTACTCCGTCCACCACCCAGTGTTCAGCCAATCATTGTTACAATTGAGGACCACATTTTTGAGGAGTACAATGAACCCCCAGTTTTTGGGAAGAGAACTATATTCAGTGCCTGCCCGTCTGGGGGACAGGAACAATGGGCTTCATGTGATGATTGCTCTAAATGGCGAAAATTGCCTGTAGACGTTCTTCTACCACCTAAGTGGACTTGTTCTGAAAATGTCTGGGATCCAACCAGATCTTCATGTTCTGCACCAGAGGAGCTAGGACCTAAGGAAGATCTTTCGAAATCCAGCAAAGACTTTAAAAGGCGAAGATTTACAGAAAATAATAAGTCAACTGGAGAATTTGAACCTTCAGGCCTTGATGCTCTTGCTAATGTGGCAGTGTTGGGAGATGGTCACGGGGATCCTTCTGAGTCATCAGCTGGGCCCACCACCAAACATCCTAGACATCGTCCTGGCTGCACCTGCATTGTCTGCATTCAGCCACCAAGTGGAAAGGGAAGACATCCTGCCGACTGTACTTGCAATGTGTGCATGACTGTGAAAAGGAGGTTCAAAACCCTTATGCTGCGTAAGAAGAAACGCCAATCGGAACGCGAAGCAGATGTTAGCCACCAGATGGATCATAGCGAAGCGTCAGATATGAATGGAGGATCTAGGGGAGACACAAGTCATGTGGAGAAAGAAGGGAGCATGAGTAGAAGACAGCTTGAGGTGGGTGAATGCAGTGCCGTGCAGATAGATCTGAATAGCCATCCTGATCGCGATGACATGCAAGTTGATGCACCAAGCATGAATGGTCATGTTGGAGCTCCAAACTGTCATCCACTACAGGCATATATGGATCAAAATGGCCCTAATGGAGGTCAGGAGTGCTTCTCTAATGGGGGATGCTTTGGACCGGTTATCTTGGAGAAGGAAGGGACAGATGATAAGGTATATTATGATGCCAATTCAAGTCAGACCAATCCTCCTTGA 2709 0.4463 MGSEVCVGVSGGSATAHEWKKGWTLSSGGFAQFCNNCGISTECKLDTLDSISAYEASIFCSKFHREQTGWRDCSFCNKISNLFDLVWQPIHSGCIVSRYLFDYLDFGGIGCISCVKASRSHLNTKEPKGAVTPTTTNASDCRPHHIDGKLLVDNVDEGKLMQFCRIVEASETNGLHQPQRDKMISSSGLKSQDIKCLTRDMDSGFSNMLTTSIRSLKFPLLENNRPTWEIKNMLEPPAQPSLSMSLGIPSGNFALASAREIAEEKLEGKPSSLFHQGQRSPPVFAKPSKTGLTMNIETNKGMNSISQAHLARPPVEGRGKSQLLPRYWPRITDEELEQLSGNLKSTVVPLFEKVLSASDAGRIGRLVLPKACAEAFFPPISQSEGLPLEMQDVKGNEWTFQFRFWPNNNSRMYVLEGVTPCIQSMQLIAGDTVTFSRIDPGGRLIMGFRKTSNALESQDVSTSAHSNGITAKETAISGARESLPSGSSYSDLLQSVEGNSEPHLNRQSEHLHLGNRVADFPQTEISGQMMKNDSLQQSVSVSDRKRTRNIGPKNKRLRINCEDALELRLTWEEAQDLLRPPPSVQPIIVTIEDHIFEEYNEPPVFGKRTIFSACPSGGQEQWASCDDCSKWRKLPVDVLLPPKWTCSENVWDPTRSSCSAPEELGPKEDLSKSSKDFKRRRFTENNKSTGEFEPSGLDALANVAVLGDGHGDPSESSAGPTTKHPRHRPGCTCIVCIQPPSGKGRHPADCTCNVCMTVKRRFKTLMLRKKKRQSEREADVSHQMDHSEASDMNGGSRGDTSHVEKEGSMSRRQLEVGECSAVQIDLNSHPDRDDMQVDAPSMNGHVGAPNCHPLQAYMDQNGPNGGQECFSNGGCFGPVILEKEGTDDKVYYDANSSQTNPP 902
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4981g00061 902 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 5 866 - -
Pral4981g00061 902 SMART B3_2 351 451 IPR003340 GO:0003677
Pral4981g00061 902 Pfam CW-type Zinc Finger 621 663 IPR011124 GO:0008270
Pral4981g00061 902 MobiDBLite consensus disorder prediction 528 545 - -
Pral4981g00061 902 SUPERFAMILY DNA-binding pseudobarrel domain 349 451 IPR015300 -
Pral4981g00061 902 MobiDBLite consensus disorder prediction 766 814 - -
Pral4981g00061 902 MobiDBLite consensus disorder prediction 770 786 - -
Pral4981g00061 902 MobiDBLite consensus disorder prediction 798 812 - -
Pral4981g00061 902 ProSiteProfiles Zinc finger CW-type profile. 616 666 IPR011124 GO:0008270
Pral4981g00061 902 MobiDBLite consensus disorder prediction 528 548 - -
Pral4981g00061 902 ProSiteProfiles B3 DNA-binding domain profile. 351 452 IPR003340 GO:0003677
Pral4981g00061 902 FunFam B3 domain-containing transcription repressor VAL1 329 456 - -
Pral4981g00061 902 Gene3D - 329 455 IPR015300 -
Pral4981g00061 902 MobiDBLite consensus disorder prediction 665 687 - -
Pral4981g00061 902 Pfam B3 DNA binding domain 351 450 IPR003340 GO:0003677
Pral4981g00061 902 CDD B3_DNA 349 450 IPR003340 GO:0003677
Pral4981g00061 902 Gene3D - 613 664 - -
Pral4981g00061 902 MobiDBLite consensus disorder prediction 652 727 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4981g00061 Pral-Chr4981 284159 291810 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4981g00061 1 839 B3 DNA Binding Superfamily AT2G30470 45.735 0.0 656
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Pral4981g00061 B3 8.9e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4981g00061 K09287 - gmx:100789848 1114.37