Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4981g00057 ATGGGGTCCGAGGTTTGTGTCGGTGTTTCTGGTGGGTCGGCCACTGCTCATGAGTGGAAGAAGGGGTGGACTCTTTCATCTGGTGGATTCGCCCAATTTTGTAATAACTGCGGAATTTCGACCGAGTGCAAGCTTGACACCCTTGATTCCATATCTGCCTATGAGGCATCCATTTTCTGTAGTAAATTCCATCGTGAACAAACTGGTTGGAGGGACTGCAGCTTTTGTAACAAGATATCAAATCTATTTGACCTGGTTTGGCAGCCTATCCACAGTGGATGCATAGTATCTAGGTATTTGTTCGACTACCTTGACTTTGGAGGTATAGGTTGCATCAGTTGTGTAAAGGCTTCTCGTTCGCATTTGAACACAAAAGAACCTAAAGGTGCTGTTACACCGACCACAACAAATGCAAGTGATTGTCGTCCTCATCACATTGATGGGAAACTGTTGGTGGATAATGTTGATGAAGGAAAACTTATGCAGTTCTGCAGAATTGTTGAAGCTAGTGAGACTAATGGTTTGCATCAGCCTCAAAGAGATAAAATGATTTCATCTAGTGGGTTGAAGAGCCAAGATATTAAGTGTCTAACAAGGGATATGGATTCAGGATTTTCAAATATGCTTACAACATCGATTCGGTCACTAAAATTTCCTTTATTAGAAAATAATAGACCAACATGGGAGATTAAAAATATGCTTGAACCGCCTGCACAACCATCTTTGAGTATGTCCCTGGGAATTCCATCAGGAAACTTTGCCCTTGCTTCTGCTAGAGAAATTGCAGAAGAAAAGCTTGAGGGCAAACCTTCTTCTCTGTTTCATCAAGGACAGAGATCTCCCCCTGTATTTGCTAAACCATCAAAGACTGGCCTTACCATGAACATAGAAACAAATAAAGGAATGAATTCTATTTCTCAGGCCCATCTTGCCCGGCCACCTGTTGAAGGAAGGGGCAAGAGCCAGCTACTTCCTCGGTACTGGCCTAGGATTACTGATGAAGAGCTGGAGCAATTGTCTGGAAATTTGAAATCCACTGTGGTGCCATTATTTGAGAAGGTGCTGAGTGCCAGTGATGCAGGTCGAATTGGTCGCCTTGTTCTTCCAAAAGCTTGTGCTGAAGCTTTTTTCCCTCCTATTTCACAATCAGAAGGTCTTCCTTTGGAAATGCAAGATGTGAAGGGGAATGAATGGACGTTTCAATTCAGATTTTGGCCTAATAACAACAGTAGGATGTACGTGTTGGAGGGTGTGACCCCTTGCATACAGTCAATGCAATTGATTGCGGGTGATACTGTGACATTTAGCAGGATAGATCCTGGGGGCAGACTTATTATGGGTTTCAGAAAGACATCAAATGCTCTAGAAAGTCAGGATGTGTCTACATCTGCGCATTCTAATGGGATTACAGCAAAGGAAACAGCCATTTCTGGTGCAAGGGAGAGCCTGCCGTCAGGAAGTAGTTATTCTGATCTTCTTCAGTCTGTGGAAGGGAACAGCGAGCCTCACTTAAATAGACAATCAGAACACCTGCATTTAGTTTCAGTTTCAGATAGGAAAAGGACTCGGAACATTGGGCCTAAAAATAAGAGGTTGCGCATTAATTGTGAAGATGCTTTGGAGTTGAGACTAACGTGGGAGGAAGCACAAGACTTACTCCGTCCACCACCCAGTGTTCAGCCAATCATTGTTACAATTGAGGACCACATTTTTGAGGAGTACAATGAACCCCCAGTTTTTGGGAAGAGAACTATATTCAGTGCCTGCCCGTCTGGGGGACAGGAACAATGGGCTTCATGTGATGATTGCTCTAAATGGCGAAAATTGCCTGTAGACGTTCTTCTACCACCTAAGTGGACTTGTTCTGAAAATGTCTGGGATCCAACCAGATCTTCATGTTCTGCACCAGAGGAGCTAGGACCTAAGGAAGATCTTTCGAAATCCAGCAAAGACTTTAAAAGGCGAAGATTTACAGAAAATAATAAGTCAACTGGAGAATTTGAACCTTCAGGCCTTGATGCTCTTGCTAATGTGGCAGTGTTGGGAGATGGTCACGGGGATCCTTCTGAGTCATCAGCTGGGCCCACCACCAAACATCCTAGACATCGTCCTGGCTGCACCTGCATTGTCTGCATTCAGCCACCAAGTGGAAAGGGAAGACATCCTGCCGACTGTACTTGCAATGTGTGCATGACTGTGAAAAGGAGGTTCAAAACCCTTATGCTGCGTAAGAAGAAACGCCAATCGGAACGCGAAGCAGATGTTAGCCACCAGATGGATCATAGCGAAGCGTCAGATATGAATGGAGGATCTAGGGGAGACACAAGTCATGTGGAGAAAGAAGGGAGCATGAGTAGAAGACAGCTTGAGGTGGGTGAATGCAGTGCCGTGCAGATAGATCTGAATAGCCATCCTGATCGCGATGACATGCAAGTTGATGCACCAAGCATGAATGGTCATGTTGGAGCTCCAAACTGTCATCCACTACAGGCATATATGGATCAAAATGGCCCTAATGGAGGTCAGGAGTGCTTCTCTAATGGGGGATGCTTTGGACCGGTTATCTTGGAGAAGGAAGGGACAGATGATAAGGTATATTATGATGCCAATTCAAGTCAGACCAATCCTCCTTGA 2634 0.4468 MGSEVCVGVSGGSATAHEWKKGWTLSSGGFAQFCNNCGISTECKLDTLDSISAYEASIFCSKFHREQTGWRDCSFCNKISNLFDLVWQPIHSGCIVSRYLFDYLDFGGIGCISCVKASRSHLNTKEPKGAVTPTTTNASDCRPHHIDGKLLVDNVDEGKLMQFCRIVEASETNGLHQPQRDKMISSSGLKSQDIKCLTRDMDSGFSNMLTTSIRSLKFPLLENNRPTWEIKNMLEPPAQPSLSMSLGIPSGNFALASAREIAEEKLEGKPSSLFHQGQRSPPVFAKPSKTGLTMNIETNKGMNSISQAHLARPPVEGRGKSQLLPRYWPRITDEELEQLSGNLKSTVVPLFEKVLSASDAGRIGRLVLPKACAEAFFPPISQSEGLPLEMQDVKGNEWTFQFRFWPNNNSRMYVLEGVTPCIQSMQLIAGDTVTFSRIDPGGRLIMGFRKTSNALESQDVSTSAHSNGITAKETAISGARESLPSGSSYSDLLQSVEGNSEPHLNRQSEHLHLVSVSDRKRTRNIGPKNKRLRINCEDALELRLTWEEAQDLLRPPPSVQPIIVTIEDHIFEEYNEPPVFGKRTIFSACPSGGQEQWASCDDCSKWRKLPVDVLLPPKWTCSENVWDPTRSSCSAPEELGPKEDLSKSSKDFKRRRFTENNKSTGEFEPSGLDALANVAVLGDGHGDPSESSAGPTTKHPRHRPGCTCIVCIQPPSGKGRHPADCTCNVCMTVKRRFKTLMLRKKKRQSEREADVSHQMDHSEASDMNGGSRGDTSHVEKEGSMSRRQLEVGECSAVQIDLNSHPDRDDMQVDAPSMNGHVGAPNCHPLQAYMDQNGPNGGQECFSNGGCFGPVILEKEGTDDKVYYDANSSQTNPP 877
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4981g00057 877 FunFam B3 domain-containing transcription repressor VAL1 329 456 - -
Pral4981g00057 877 SMART B3_2 351 451 IPR003340 GO:0003677
Pral4981g00057 877 MobiDBLite consensus disorder prediction 745 761 - -
Pral4981g00057 877 MobiDBLite consensus disorder prediction 741 789 - -
Pral4981g00057 877 MobiDBLite consensus disorder prediction 773 787 - -
Pral4981g00057 877 MobiDBLite consensus disorder prediction 627 702 - -
Pral4981g00057 877 Pfam B3 DNA binding domain 351 450 IPR003340 GO:0003677
Pral4981g00057 877 SUPERFAMILY DNA-binding pseudobarrel domain 349 451 IPR015300 -
Pral4981g00057 877 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 5 841 - -
Pral4981g00057 877 MobiDBLite consensus disorder prediction 500 524 - -
Pral4981g00057 877 MobiDBLite consensus disorder prediction 640 662 - -
Pral4981g00057 877 ProSiteProfiles B3 DNA-binding domain profile. 351 452 IPR003340 GO:0003677
Pral4981g00057 877 ProSiteProfiles Zinc finger CW-type profile. 591 641 IPR011124 GO:0008270
Pral4981g00057 877 Gene3D - 329 455 IPR015300 -
Pral4981g00057 877 Pfam CW-type Zinc Finger 596 638 IPR011124 GO:0008270
Pral4981g00057 877 MobiDBLite consensus disorder prediction 503 523 - -
Pral4981g00057 877 CDD B3_DNA 349 450 IPR003340 GO:0003677
Pral4981g00057 877 Gene3D - 588 639 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4981g00057 Pral-Chr4981 284152 291810 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4981g00057 1 814 B3 DNA Binding Superfamily AT2G30470 46.416 0.0 656
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Pral4981g00057 B3 8.6e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4981g00057 K09287 - gmx:100789848 1092.41