Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4981g00046 ATGAAGCCCGAGCAGATTGAAGAGGTTCGATTGCGGCTTAATCTCGATGTTTCTGTTGCTTCTGACTCTCTTCCTGCACCTGCACCAATAGAATCATTTTCAGACATGTGCTTGAACCCAAGTATCATGAAGGATATTGCTTATCATGAATACACAAGGCCAACTTCTATCCAGGCACAAGCCATGCCAATTGCTCTTAGTGGAAGGGATCTATTGGGTTGTGCTGAAACTGGCAGTGGAAAAACTGCAGCTTTCACGATTCCCATGATAGAGCATTGCTTGGCTCAACCACCGATTCGGCGTGGTGATGGTCCTTTAGCATTGGTTTTGGCCCCTACTAGAGAGCTTGCTCAACAAATAGAGAAAGAGGTTAAAGCTTTTAGCAGATCACTTGAGTCATTAAAAACTGCAATAGTTGTAGGGGGAACTAACATTGAAAAGCAGAGATCTGAGCTACGAGCAGGAGTTGACATAGTGGTTGCTACCCCGGGAAGATTCATCGATCATTTACAACAAGGAAATACTTCGCTTTCTAGAATTTCTTTTGTTGTTCTAGATGAGGCAGATAGGATGCTTGATATGGGTTTTGAACCCCAGATAAGAGAGGTCATGAGAAATCTTCCAGAGAAGCATCAAACATTGTTATTTAGTGCAACTATGCCTGTGGAGATTGAAGGATTAGCAAAGGAGTACTTAGCAAGCCCGGTGCAAGTGAACGTAGGGAAAGTGAGTAGCCCAACAGCAAACGTTTGTCAAACTCTTGTGAAGGTTTCTGAAAATGAGAAGATTGATCGGCTTCTGGATATGCTTGTTGAGGAGGCGTCACAGGCTGAAAAATGCAGTCGTCCATTTCCATTAACAATTGTGTTTGTGGAAAGAAAGACAAGGTGTGATGAAATTGCTGAAGCATTGGTAGCCCAAGGTTTATCTGCTGTTTCTCTTCATGGTGGCCGTAGTCAAAGTGAAAGAGAGTCTGCTTTGCATGATTTTCGAAGTGGCTCCACTAACATTTTGGTTGCCACTGATGTTGCATCTCGTGGCTTGGATGTCACAGGAGTGTCACATGTCATCAATTTAGATCTTCCAAAGACCATGGAAGATTATGTGCACCGGATTGGCAGGACAGGGCGTGCAGGATCAACAGGCCAGGCGACTTCTTTTTACACTGATCGTGATATGTTCCTTGTTGCAAATATAAGGAAGGCTATAGCTGATGCTGAGTCTGGGAACGCTGTGGCTTTTGCAACTGGGAAGGTTGCTAGAAGGAAGGAGAAGGAGGCGGCGGCTGCCCAAAAGGAGGCAAAGATAGCTCTGTCCAAGAACTTAGCTTTTGGAAACGCCTCAATTGCTATTGAGGATAAGTATAGGTTCATGATTACGGCGTCAAATAACAAAAGAGAGGGTGCAGCAGATAGTGCTTGGGATGATTGA 1431 0.4437 MKPEQIEEVRLRLNLDVSVASDSLPAPAPIESFSDMCLNPSIMKDIAYHEYTRPTSIQAQAMPIALSGRDLLGCAETGSGKTAAFTIPMIEHCLAQPPIRRGDGPLALVLAPTRELAQQIEKEVKAFSRSLESLKTAIVVGGTNIEKQRSELRAGVDIVVATPGRFIDHLQQGNTSLSRISFVVLDEADRMLDMGFEPQIREVMRNLPEKHQTLLFSATMPVEIEGLAKEYLASPVQVNVGKVSSPTANVCQTLVKVSENEKIDRLLDMLVEEASQAEKCSRPFPLTIVFVERKTRCDEIAEALVAQGLSAVSLHGGRSQSERESALHDFRSGSTNILVATDVASRGLDVTGVSHVINLDLPKTMEDYVHRIGRTGRAGSTGQATSFYTDRDMFLVANIRKAIADAESGNAVAFATGKVARRKEKEAAAAQKEAKIALSKNLAFGNASIAIEDKYRFMITASNNKREGAADSAWDD 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4981g00046 476 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 31 59 IPR014014 GO:0003724
Pral4981g00046 476 Coils Coil 117 137 - -
Pral4981g00046 476 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 103 399 IPR027417 -
Pral4981g00046 476 SMART ultradead3 50 255 IPR014001 -
Pral4981g00046 476 Pfam DEAD/DEAH box helicase 55 224 IPR011545 GO:0003676|GO:0005524
Pral4981g00046 476 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 184 192 IPR000629 -
Pral4981g00046 476 CDD SF2_C_DEAD 252 388 - -
Pral4981g00046 476 CDD DEADc 42 238 - -
Pral4981g00046 476 Gene3D - 244 438 IPR027417 -
Pral4981g00046 476 Pfam Helicase conserved C-terminal domain 262 379 IPR001650 -
Pral4981g00046 476 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 62 238 IPR014001 -
Pral4981g00046 476 Gene3D - 1 242 IPR027417 -
Pral4981g00046 476 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 26 431 - -
Pral4981g00046 476 SMART helicmild6 298 379 IPR001650 -
Pral4981g00046 476 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 262 420 IPR001650 -
Pral4981g00046 476 Coils Coil 420 440 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4981g00046 Pral-Chr4981 220557 240616 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4981g00046 31 401 Eukaryotic Initiation Factors Gene Family AT1G72730 35.733 1.61e-69 225
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4981g00046 K12823 - gmx:100818387 828.935