Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4981g00042 ATGTCCCTGCCCTCCGGCCTTCATCCTCGCCCCGAAACATGCCGAGTCCCGGTGAGAAAGAGAACCGATCACAGGCTCCTCAGGATCATACTCACTGATCACGACGCCACTGATTCTGACTCTGACTCTGACTCTGAATCTTCCGCCGTTGAAACCTCACAACAATCATCAAGACTCAGGCGCCGCATCACACAGATCACCCTCCGTCTTCCCTCCCCCAATTCTCCCTCTTCCTCCGCCACCTCTCCCCGCGCTCCTCCCAAATCAAACCCGACCCGATTAAGGCGACTCGCCTGTGCCTCTACCTCTCGCCGCCATAATAGGTACAGAGGTGTTCGCCAGAGGCCTTGGGGTCGGTGGGCCGCCGAGATCCGGGACCCGGGCCGAAGAAAACGGGTCTGGCTCGGAACCTTCGACACGGCGGAGGAAGCCGCATCTGAGTACGACAGGGCAGCACTGAAGCTCAAGGGTCCAAAAGCGGTCACCAACTTCCCTAACACCGTCAGTACGGACGATTCAAAGACCCCGACGGCCGCCGCGGATGAAAGTCCCAGCACTGAAGGAGCGGTTTCGTACTCCGATACGGCGGCGTCGCCCACGTCTGTGCTGCCCTGCGATGGCGATTCGACGGCGTTCGACGATTTCCGCATCGGCGATGTGGATGCGTTCGGGTTCGACATAGACGTGCCGCTGGGGCTGCCGGACGTGAACGTGATGTTGTCGAGTCAACCGTTTGGGAAAGAGGACTTCGGTGAGTTTGACTTCGATGACTTGACGTGGCCCAACTAA 789 0.5932 MSLPSGLHPRPETCRVPVRKRTDHRLLRIILTDHDATDSDSDSDSESSAVETSQQSSRLRRRITQITLRLPSPNSPSSSATSPRAPPKSNPTRLRRLACASTSRRHNRYRGVRQRPWGRWAAEIRDPGRRKRVWLGTFDTAEEAASEYDRAALKLKGPKAVTNFPNTVSTDDSKTPTAAADESPSTEGAVSYSDTAASPTSVLPCDGDSTAFDDFRIGDVDAFGFDIDVPLGLPDVNVMLSSQPFGKEDFGEFDFDDLTWPN 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4981g00042 262 SUPERFAMILY DNA-binding domain 108 166 IPR016177 GO:0003677
Pral4981g00042 262 CDD AP2 108 167 IPR001471 GO:0003700|GO:0006355
Pral4981g00042 262 ProSiteProfiles AP2/ERF domain profile. 108 165 IPR001471 GO:0003700|GO:0006355
Pral4981g00042 262 Gene3D AP2/ERF domain 107 167 IPR036955 GO:0003700|GO:0006355
Pral4981g00042 262 SMART rav1_2 108 171 IPR001471 GO:0003700|GO:0006355
Pral4981g00042 262 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 24 203 - -
Pral4981g00042 262 Pfam AP2 domain 108 157 IPR001471 GO:0003700|GO:0006355
Pral4981g00042 262 MobiDBLite consensus disorder prediction 35 108 - -
Pral4981g00042 262 PRINTS Ethylene responsive element binding protein signature 109 120 IPR001471 GO:0003700|GO:0006355
Pral4981g00042 262 PRINTS Ethylene responsive element binding protein signature 131 147 IPR001471 GO:0003700|GO:0006355
Pral4981g00042 262 MobiDBLite consensus disorder prediction 46 88 - -
Pral4981g00042 262 MobiDBLite consensus disorder prediction 163 199 - -
Pral4981g00042 262 PIRSF PTI6 11 261 IPR017392 GO:0003700
Pral4981g00042 262 FunFam Ethylene-responsive transcription factor 2 107 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4981g00042 Pral-Chr4981 190006 191437 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4981g00042 21 203 AP2-EREBP Transcription Factor Family AT4G27950 42.132 1.34e-35 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pral4981g00042 AP2 2.1e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4981g00042 K13434 - gmx:100800489 216.853