Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4981g00015 ATGGAGTCGGTTCTGAAGAAATACTTCGGGTTTTCCGAGTTCCGCCTGTATCAAAAGGATGTCATCGAGAAAATATTAGAGAAAAGGGACTGCTTGGTGGTCATGGCTACTGGCAGCGGGAAGTCCTTGTGCTATCAGGTGCCTCCGTTGGTTGCGAGAAAGACTGGGATAGTTGTTAGCCCTCTTATTTCATTAATGCAAGACCAGGTAATGGCTTTGAAACAACGGGGTATCAGAGCTGAGTATCTTGGGAGCGCGCAGACTGACCCCACTATCCAGACTAAAGCTGAGAGTGGCCAATTTGACATTCTGTTCTTGACTCCTGAGAAGGCATGCTTAATTCCTACCAGCTTCTGGCTGAACTTGCTGAAGTCAGGAATCTGTCTTTTTGCTGTTGACGAGGCACATTGCATATCCGAATGGGGCCATGATTTTAGGGTGGAATACAAGCAACTAGACAAGTTACGTGGTGTTCTACCTGATGTTCCTTTTGTTGGCCTAACTGCAACTGCTACGGAAAAGGTTCGAGTTGACATCATCAGTTCCTTGAAGATGTGTAATCCTTATGTTTCAGTTGGTTCATTTGATCGCTCCAATCTTTTCTATGGCGTCAAGCCTTTTAACCCCGGACAACATTTTGTGAATGAGCTTGTGCAAGAGATTTCGAAAAAAGTAGCTACTGGTGGTTCCACTATAATCTACTGCACTACAGTCAAAGATGTAGAACAGATTTCCAAGTCACTTGTGGAAGCAGGTGTTGCAGCAGGGATGTATCATGGGCAAATGAGTAAAAAATCTCGTCAGGAATCTCATAGATTATTTGTTAGAGATGAACTGCAAGTCATGGTTGCAACTGTTGCTTTTGGCATGGGTATAGATAAGCCTGACATAAGACAGGTGATTCACTATGGCTGCCCTAAGAGCCTGGAGTCCTACTACCAGGAAAGTGGGCGATGTGGTCGAGATGGTATAGCTTCTGTTTGTTGCCTTTACTACACAAGAAGTGACTTTACAAAGGGCAACTTTTATTGTGGAGAATTACAAACAGTAAAGCAAAAAAAAGCTGTCATGGAGTCATTAATGGCTGCTGAACGCTATTGCTTGCTGACAACCTGCAGAAGAAAGTTCTTGCTCGAATACTTTGGGGAAAATGTTTCAGCTGATAGATGTGGAAATTGTGATAACTGCATTGTCTCAAAGAAGCAACGGGACATGTCAACAGAAGTATTTCTTCTCCTGGCTTGCATTCAATCATGCCGGGGTAAATGGGGCCTGAACATGCCAATTGACATCCTGCGTGGGTCTCGAGCCAAGAAAATTCTTGATGCTCAGTTTGACAAGCTTCCTCTCCATGGTCTGGGGAAAGCTCACCCATCAAATTGGTGGAAAGCACTAGGACATCAATTAATTTCTCATGGTTATTTGAAGGAGACCGTTAATGATGTGTACAGAACTGTGAGTGTCAGTTCAAAAGGAGAGCAATTTCTGGCCTCTTCCACACCGGATTATCAACCACCCATAGTTCTGTCAGTGACTGCTGAGATGCTTGATGAAGAGGAAAATAGATCTGCCCCAGAAGAATTCAAAAGTTTAGCCACTTCAGATACTGAAGGGTTTTCAGAGGCTGAGGGGCGACTCTACCAAATGCTTTTGGAAGAGAGAATGAAACTCGCAAGAAACGTTGGGACAGCTCCATATGCCGTTTGTGGCGATCAAACAATCAAGAAAATTGCACTGACTAGACCATCTACAAAAGCAAGGCTAGCAAATGTTGATGGTGTGAATCAGCACCTGGTAACAAAATATGGAGATCATTTTCTTCAAGTTATTCAACAATTGTCACAAGGATTGAACCTTTCACTGGATGGAGAAGCAAGCTTGCCAGCTCCTGCAGTAAGGAAAGTGTCCACTGTAAGTCTAACCAGTGAATCAAAGAAGTTGACGCCAGCAAAGTTTGAGGCCTGGAAAATGTGGCAGGAAGATGGCCTTTCTATTCAGATGATTGCTAACCTTCCAGGTAGATCAGCTCCTATAAAAGAACAGACTGTTGTTGAATATCTGCTGGAAGCTGCCCGAGAAGGATTGCCTTTTGATTGGACTAGATTCTGTGAGATGGTTGGACTGAAACCTGAAATTATCTCGGAAATTCAGGGTGCTATTCTAAAGGTTGGATCTACAGAAAAATTGAAGCCTTTAAAAAATGAGTTACCAGAAGACGTAAGCTATTTACACATCAAGACTTATTTGGCAATGCAAAACGCTGGAGTATCCCTTGAAGGCGCTCAGCAAGGGAGCAGCCAGGCAGAGAAAGATGGTGAACTCACGAAGGAGGCATCAGATTTATCGCGGAATCCATTAGATACGGGCAACACGGCAATCAGTGGGGAAATTGACATGTCTCCCAATAGTCCGATGGAAAATTGTGACCCAGATAAGGATGAGGAATCCACTAGACCTACCAATGGTTGCCAGGTACGGAATCTTCCATTAGTCTGTGAGGAGGAGTTGACAAACAAACGCCAAAAGGTCAGTGAACCAAGTGAAGAGAATCCTATCAAATTGAAGGCAACGGGGAGTTCCGTAGTAGAGTGGCTGAAGAACCATGAAGGGGCTACATTGAATGATATTCTGGAGAACTTCAATGGATCCAGTGATGATTCTGTGGTGGAACTGCTGAATTACCTCGAGGGTGAGTTTTTGATCTATAAGAAAAATGGCATGTACAGGCCTATGTGA 2736 0.4382 MESVLKKYFGFSEFRLYQKDVIEKILEKRDCLVVMATGSGKSLCYQVPPLVARKTGIVVSPLISLMQDQVMALKQRGIRAEYLGSAQTDPTIQTKAESGQFDILFLTPEKACLIPTSFWLNLLKSGICLFAVDEAHCISEWGHDFRVEYKQLDKLRGVLPDVPFVGLTATATEKVRVDIISSLKMCNPYVSVGSFDRSNLFYGVKPFNPGQHFVNELVQEISKKVATGGSTIIYCTTVKDVEQISKSLVEAGVAAGMYHGQMSKKSRQESHRLFVRDELQVMVATVAFGMGIDKPDIRQVIHYGCPKSLESYYQESGRCGRDGIASVCCLYYTRSDFTKGNFYCGELQTVKQKKAVMESLMAAERYCLLTTCRRKFLLEYFGENVSADRCGNCDNCIVSKKQRDMSTEVFLLLACIQSCRGKWGLNMPIDILRGSRAKKILDAQFDKLPLHGLGKAHPSNWWKALGHQLISHGYLKETVNDVYRTVSVSSKGEQFLASSTPDYQPPIVLSVTAEMLDEEENRSAPEEFKSLATSDTEGFSEAEGRLYQMLLEERMKLARNVGTAPYAVCGDQTIKKIALTRPSTKARLANVDGVNQHLVTKYGDHFLQVIQQLSQGLNLSLDGEASLPAPAVRKVSTVSLTSESKKLTPAKFEAWKMWQEDGLSIQMIANLPGRSAPIKEQTVVEYLLEAAREGLPFDWTRFCEMVGLKPEIISEIQGAILKVGSTEKLKPLKNELPEDVSYLHIKTYLAMQNAGVSLEGAQQGSSQAEKDGELTKEASDLSRNPLDTGNTAISGEIDMSPNSPMENCDPDKDEESTRPTNGCQVRNLPLVCEEELTNKRQKVSEPSEENPIKLKATGSSVVEWLKNHEGATLNDILENFNGSSDDSVVELLNYLEGEFLIYKKNGMYRPM 911
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4981g00015 911 Gene3D HRDC domain 539 619 IPR044876 -
Pral4981g00015 911 Pfam DEAD/DEAH box helicase 17 175 IPR011545 GO:0003676|GO:0005524
Pral4981g00015 911 Pfam Helix-turn-helix domain 653 749 IPR029491 -
Pral4981g00015 911 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 22 189 IPR014001 -
Pral4981g00015 911 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 213 364 IPR001650 -
Pral4981g00015 911 SUPERFAMILY "Winged helix" DNA-binding domain 395 501 IPR036390 -
Pral4981g00015 911 Gene3D - 1 195 IPR027417 -
Pral4981g00015 911 Pfam RecQ zinc-binding 348 396 IPR032284 -
Pral4981g00015 911 PANTHER DNA HELICASE RECQ FAMILY MEMBER 2 683 - -
Pral4981g00015 911 Pfam RQC domain 400 498 IPR018982 GO:0006260|GO:0006281|GO:0043138
Pral4981g00015 911 NCBIfam RecQ family ATP-dependent DNA helicase 3 456 IPR004589 GO:0004386|GO:0006310
Pral4981g00015 911 FunFam ATP-dependent DNA helicase 536 626 - -
Pral4981g00015 911 CDD SF2_C_RecQ 197 332 - -
Pral4981g00015 911 SUPERFAMILY HRDC-like 539 615 IPR010997 GO:0000166|GO:0044237
Pral4981g00015 911 ProSiteProfiles HRDC domain profile. 540 620 IPR002121 GO:0003676
Pral4981g00015 911 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 54 336 IPR027417 -
Pral4981g00015 911 FunFam ATP-dependent DNA helicase 197 398 - -
Pral4981g00015 911 FunFam ATP-dependent DNA helicase 399 523 - -
Pral4981g00015 911 SMART helicmild6 242 323 IPR001650 -
Pral4981g00015 911 FunFam ATP-dependent DNA helicase 1 195 - -
Pral4981g00015 911 SMART ultradead3 10 205 IPR014001 -
Pral4981g00015 911 Gene3D - 197 399 IPR027417 -
Pral4981g00015 911 SMART RQC_2 404 508 IPR018982 GO:0006260|GO:0006281|GO:0043138
Pral4981g00015 911 Pfam Helicase conserved C-terminal domain 216 322 IPR001650 -
Pral4981g00015 911 MobiDBLite consensus disorder prediction 781 801 - -
Pral4981g00015 911 CDD DEXHc_RecQ 2 196 - -
Pral4981g00015 911 Gene3D - 400 524 IPR036388 -
Pral4981g00015 911 MobiDBLite consensus disorder prediction 760 823 - -
Pral4981g00015 911 Pfam HRDC domain 545 610 IPR002121 GO:0003676
Pral4981g00015 911 SMART hrdc7 540 620 IPR002121 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4981g00015 Pral-Chr4981 53054 62503 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4981g00015 9 339 Eukaryotic Initiation Factors Gene Family AT3G19760 23.209 8.82e-09 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4981g00015 K03654 - gmx:100797777 1387.86