Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4980g00006 ATGAAGCTTTCAACATCAGGGTTGGGTCAGCAGGGACAAGAAGGGGGAGGAGGGGAGAAGAAATGTCTGAATTCCGAGCTATGGCATGCATGCGCGGGTCCTCTCGTGTCCCTACCAAATGCAGGGACTCGTGTGGTTTACTTCCCTCAGGGTCATAGCGAGCAGGTTGCAGCCACAACTAACAGAGAACTTGATGGGCACATACCCAATTACCCGAGCTTGCCGCCCCAGTTAATTTGCCAACTTCATAATGTCACAATGCATGCTGATGTTGAAACAGATGAAGTATATGCTCAAATGACACTGCAGCCATTGACTCCGCAAGAGCAGAAGGAAACATTTCTTCCTTTGGAATTGGGCATTCCGAGCAAACAGCCCTCAAATTATTTTTGCAAGACACTAACGGCAAGTGACACCAGCACACATGGAGGGTTTTCTGTTCCTCGTCGGGCAGCTGAGAAAGTTTTCCCTCCACTGGATTTCTCACAGCAACCACCAGCACAAGAACTAATTGCTAGGGACCTCCATGATGTTGAGTGGAAGTTCAGACATATTTTTCGTGGACAGCCAAAACGACACCTTCTTACAACAGGCTGGAGTGTATTTGTTAGTGCCAAGAGACTTGTTGCTGGAGATTCTGTGCTCTTTATATGGAATGAAAAGAATCAGCTGCTTTTAGGAATACGTCGTGCCAGTCGACCCCAAACTGTGATGCCATCATCTGTTCTTTCAACTGATAGTATGCACATTGGACTTCTTGCAGCTGCTGCTCACGCTGCTGCAACTAATAGCTGTTTCACAGTTTTCTATAATCCAAGGGCTAGTCCTTCTGAGTTTGTCATACCACTTTCAAAATATGTCAAGGCTGTGTACCACACACGTGTTTCAGTTGGCATGCGATTCAGGATGCTTTTTGAGACTGAGGAATCAAGTGTACGCAGGTACATGGGTACGATAACTGGTATAAGTGATCTGGATTCTGTTCGTTGGCCAAATTCTCACTGGCGATCTGTTAAGGTTGGTTGGGATGAATCAACAGCAGGAGATAGGCAGCCGCGGGTATCGTTATGGGAAATTGAGCCTTTGACAACATTCCCAATGTATCCATCACTATTTCCCCTCAGATTGAAGCGGCCATGGCATCCTGGATCTTCGTCTTTGCATGATGGAAGAGACGAAGCAGGGCTGATGTGGCTGAGAGGTGGACCTGGAGATCAAGGTCTCAACTCCCTCAATTTTCAAGGTGGTGGTTTGTTGCCGTGGATGCAGCAGCGACTAGATCCAACTGTGCTAGGAAATGACCATAATCAACAGTATCAAGCCATGCTGGCTGCTGGTTTGCAGAACCTAGGGAGCGGAGATCTCTTGCGTCAACAAATGATGCATTTGCAACAACCCTTCCATTTTCTTCAGTCAGGAAACCACAATCCTCTGCAGCTTCAGCAGCATCAAGCAATTCAGCAATCGATGAGTTCTAATATCCTTCAGCCACAGACTCAAGTGTTGGCAGAGAACATGTCTCAGCACCTCCTTCAGAAACCACATAACAATCAAGAAGACCAAGTGCAGCAACAGCAGCAGCCTCAGAATAGTTATCATGATGCATTTTTTATTCAGGGTGACCAGCTCCCACCGAGGCAACACTCCCATGCTCCTTCACCATCATATTCAAAACCTGATTTCTTTGATTCAAGCATGAAGTTCTCGTCGGTTTCCCCAGGGCAGAACATGCCCAGTTCACTTTGTCCGGAAGGGAGTAGCAATCTTTTCAACTTACCAAGAAGCAGTCAATCCATGCTGACTGAACAATTGGCCCAACAATCATGGAATCCGAAGTATGCACCTGTGCAGGTGAGTGCTGCCTTTGGCAGCTCAATGTCACACTCACGGTATACTGAGAAAGATTCTGCAACGGTGCCATCACATTGTGCTTCAGATGCACAAAATCCTACCCTCTTTGGTGTTAATATTGATTCGTCTGGACTTCTACTCCCCACCACTGTCCCTGGCTATTCAGCTTCCTCGGTTGGTACTGATGCATCAACCATGCCATTAGGGGACTCTGGATTCCAGGGTCCTCTGTATAATTGTGTGCAAGATTCTGCAGAGTTGATTCAGAGTTCAGGCCCAGTTGACCCACAAAACCCAACTCAGACATTTGTCAAGGTCTACAAGTCAGGGTCGGTTGGGCGCTCCCTTGATATCTCTCGGTTCAGCAGCTATCATGAGCTGAGAGAGGAGTTGGCTCAAATGTTTGGAATTGAGGGGAAGTTAGAAGACCCTCTTAGATCAGGCTGGCAGCTTGTATTTGTCGACAGGGAGAATGATATTCTTCTCCTTGGAGACGACCCATGGGAATCTTTCGTCAATAATGTTTGGTACATCAAGATACTCTCACCTGAGGATATTATGAAGATGGGTGAGCAATCGGTGGAATCGCTTGGTCCAAATGTGGGACGAAGGATGAACGGCAGCACCGCAGAATCTCAGGACCTTTCTGGCTTTCCATCAATGGGCTCGCTTGAATACTGA 2532 0.4716 MKLSTSGLGQQGQEGGGGEKKCLNSELWHACAGPLVSLPNAGTRVVYFPQGHSEQVAATTNRELDGHIPNYPSLPPQLICQLHNVTMHADVETDEVYAQMTLQPLTPQEQKETFLPLELGIPSKQPSNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRASRPQTVMPSSVLSTDSMHIGLLAAAAHAAATNSCFTVFYNPRASPSEFVIPLSKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDSVRWPNSHWRSVKVGWDESTAGDRQPRVSLWEIEPLTTFPMYPSLFPLRLKRPWHPGSSSLHDGRDEAGLMWLRGGPGDQGLNSLNFQGGGLLPWMQQRLDPTVLGNDHNQQYQAMLAAGLQNLGSGDLLRQQMMHLQQPFHFLQSGNHNPLQLQQHQAIQQSMSSNILQPQTQVLAENMSQHLLQKPHNNQEDQVQQQQQPQNSYHDAFFIQGDQLPPRQHSHAPSPSYSKPDFFDSSMKFSSVSPGQNMPSSLCPEGSSNLFNLPRSSQSMLTEQLAQQSWNPKYAPVQVSAAFGSSMSHSRYTEKDSATVPSHCASDAQNPTLFGVNIDSSGLLLPTTVPGYSASSVGTDASTMPLGDSGFQGPLYNCVQDSAELIQSSGPVDPQNPTQTFVKVYKSGSVGRSLDISRFSSYHELREELAQMFGIEGKLEDPLRSGWQLVFVDRENDILLLGDDPWESFVNNVWYIKILSPEDIMKMGEQSVESLGPNVGRRMNGSTAESQDLSGFPSMGSLEY 843
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4980g00006 843 SMART B3_2 130 232 IPR003340 GO:0003677
Pral4980g00006 843 MobiDBLite consensus disorder prediction 814 843 - -
Pral4980g00006 843 Pfam AUX/IAA family 715 804 IPR033389 -
Pral4980g00006 843 Gene3D - 714 807 - -
Pral4980g00006 843 SUPERFAMILY CAD & PB1 domains 709 792 - -
Pral4980g00006 843 CDD B3_DNA 129 230 IPR003340 GO:0003677
Pral4980g00006 843 MobiDBLite consensus disorder prediction 546 561 - -
Pral4980g00006 843 FunFam Auxin response factor 128 232 - -
Pral4980g00006 843 ProSiteProfiles B3 DNA-binding domain profile. 130 232 IPR003340 GO:0003677
Pral4980g00006 843 ProSiteProfiles PB1 domain profile. 718 802 IPR000270 GO:0005515
Pral4980g00006 843 Gene3D - 294 366 - -
Pral4980g00006 843 MobiDBLite consensus disorder prediction 819 836 - -
Pral4980g00006 843 FunFam Auxin response factor 294 366 - -
Pral4980g00006 843 Gene3D - 128 231 IPR015300 -
Pral4980g00006 843 MobiDBLite consensus disorder prediction 542 561 - -
Pral4980g00006 843 Pfam B3 DNA binding domain 130 231 IPR003340 GO:0003677
Pral4980g00006 843 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 19 807 IPR044835 GO:0003677|GO:0006355|GO:0009725
Pral4980g00006 843 FunFam Auxin response factor 713 807 - -
Pral4980g00006 843 Pfam Auxin response factor 256 339 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Pral4980g00006 843 SUPERFAMILY DNA-binding pseudobarrel domain 114 259 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4980g00006 Pral-Chr4980 49242 56502 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4980g00006 100 815 B3 DNA Binding Superfamily AT5G37020 68.320 0.0 909
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Pral4980g00006 AUX_IAA 1.5e-07 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4980g00006 - - gmx:100780393 1425.61