Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4979g00024 ATGGAAGCAGAAGAAGAACGAAGCCTAGCAAGCTTCCTAAGATGGGCAGGAGGGCTTGGAATATCAGACGTGGCAATCACCAATCCATCCCAAGATTCTATTTCCTGTCTGGGTTATTCTCTATGCGTCTCCCATTTTCCTCACTCTGGCGGTAGAGGTTTGGGTGCTGTGCGAGACCTTAGGAGGGGAGAGTTGATCCTCAGAGTTCCAAAATCTGCCTTAATGACATCAGGGAATGTCCTGGAAGATAAGAAGCTCTCCATTGCTGTTAATAACCACCCTTATCTCTCATCTGCCCAGATATTGATCGTTTGCTTATTATATGAAATGGGCAAAGGAAAATCTTCAAAGTGGCATCCTTACCTTATGCATTTGCCGCATACTTATGACATACTAGCTACATTTGGTGAACTCGAGAAACGAGCTCTTCAAGTGGATGAGGCTCAGTGGGTCACAGAAAAGGCTACATTAAAGGCCAAATCAGAGTGGAAAGAAGCCAATGCCGTGATGGAAGAAATCAAACTCAAGTCCCAACTTTTAACGTTGAAGGCATGGCTTTGGGCTACTGCAACGATATCGTCCCGGACATTGCACATACCATGGGATGAAGCTGGATGTTTATGCCCTGTGGGTGACTTGTTTAATTATGATGCACCTGGAAGGGGCCCCCTGACCCCGAAGATAAGGAGATTAATGTTTGATGCCGAGGAGCTTGATTCTCATTCCCAGAGATTAACAGATGGTGGATTTGAGGAAGATGTTAATTCATATTGCTTTTATGCTAGGGAAAATTACAAGCAAGGAGAGCAGGTTCTATTATGCTATGGACTGTACACAAATTTAGAGCTTCTTGAACATTATGGTTTTCTCCTACCAGAAAATCCAAATGACAAAATTTTCATTCCTCTCGAATCTGCTGTATATTCTTCCAGTTCATGGCCTAAAGAGTCGCTCTATATTTGCCATGACGGGAAGCCTTCCTTCGCATTACTGTCTGCATTGAGGTTGTGGGCGACCCCTAAAAACAAGCGTAAGTCCGTCAGGCATCTTGTGTATTCTGGTTCCCAGTTGTCTGTGGACAATGAAATTGTTGTCATGAAATGGCTATCAAAGACCTGCGATTCTGCACTGAAGAGTTTGCCGACATCAATTGATGAAGACACAATACTCCTGAATGCGATGGATAATAGTCGAGATTTTTGTAGTTTCATGGAAATCACCAAACTGTTGTCTTCTAGGGACGAGATTTGTGCGTTTTTGGAAGCTAATAATCTGCAGGATGGCCATGGTTTAACTGATATACTTGTATCCAGAAAAGCTAGGAGGTCCATGGACAAGTGGAAATTGGCTGTTCAATGGCGGCTTGGGTATAAAAAGGTTCTTGTGAATTGTATCTCTTATTGCAACGAAATGCTTGAGTCTCTTTTGACATAA 1434 0.431 MEAEEERSLASFLRWAGGLGISDVAITNPSQDSISCLGYSLCVSHFPHSGGRGLGAVRDLRRGELILRVPKSALMTSGNVLEDKKLSIAVNNHPYLSSAQILIVCLLYEMGKGKSSKWHPYLMHLPHTYDILATFGELEKRALQVDEAQWVTEKATLKAKSEWKEANAVMEEIKLKSQLLTLKAWLWATATISSRTLHIPWDEAGCLCPVGDLFNYDAPGRGPLTPKIRRLMFDAEELDSHSQRLTDGGFEEDVNSYCFYARENYKQGEQVLLCYGLYTNLELLEHYGFLLPENPNDKIFIPLESAVYSSSSWPKESLYICHDGKPSFALLSALRLWATPKNKRKSVRHLVYSGSQLSVDNEIVVMKWLSKTCDSALKSLPTSIDEDTILLNAMDNSRDFCSFMEITKLLSSRDEICAFLEANNLQDGHGLTDILVSRKARRSMDKWKLAVQWRLGYKKVLVNCISYCNEMLESLLT 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4979g00024 477 FunFam Protein SET DOMAIN GROUP 40 294 408 - -
Pral4979g00024 477 Pfam SET domain 51 276 IPR001214 GO:0005515
Pral4979g00024 477 Gene3D set domain protein methyltransferase, domain 1 7 290 - -
Pral4979g00024 477 SUPERFAMILY SET domain 43 294 IPR046341 -
Pral4979g00024 477 ProSiteProfiles SET domain profile. 39 276 IPR001214 GO:0005515
Pral4979g00024 477 Pfam Rubisco LSMT substrate-binding 325 461 IPR015353 -
Pral4979g00024 477 FunFam Protein SET DOMAIN GROUP 40 9 290 - -
Pral4979g00024 477 CDD SET_LSMT 40 290 - -
Pral4979g00024 477 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 286 470 IPR036464 -
Pral4979g00024 477 Gene3D - 294 476 IPR036464 -
Pral4979g00024 477 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 7 411 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4979g00024 Pral-Chr4979 120729 124457 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Pral4979g00024 SET 2.4e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4979g00024 - - gmx:100787452 723.391