Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4979g00021 ATGGCACCTGTTTCGCTGCCTCCAGGTTTCAGGTTCCACCCTACAGATGAAGAGCTGGTTGCTTATTATCTCAAAAGAAAGATCAACGGGCACAAGATTGAGTTAGAGATCATCCCCGAAGTTGATCTTTACAAGTGTGAACCCTGGGACTTGCCTGGAAAATCGTTATTGCCGGGAAAAGATTTGGAGTGGTATTTCTTCAGTCCTCGTGATAGGAAGTACCCAAATGGCTCAAGAACAAATCGAGCCACCAAATCGGGATATTGGAAAGCCACAGGGAAAGATAGGAAAGTGAATTCTCAATCTCGTTCGGTGGGTATGAAGAAAACCCTAGTTTACTATCGAGGTCGGGCCCCTCATGGATGTCGTACCAACTGGGTTATGCATGAGTATCGACTTGACGAAAGAGAATGTGAAGTTGCTTCTGGCGTTCAGGATGCTTATGCTCTATGTCGTGTGTTCAAGAAGACTGCAGTTATAACTACGAAAATCGGAGAGCATTATGGGAATCAGATTATGAATACAAGTGATCAGTCATCCAGCATTGAACTATACTCTGAAGGAAAATCAGGAGAAGATTTCGAGAGCTCAGATTATTTGATGCCTCTGGATCATAGCTCACCCCATATTGGAAATAATCCCCCTTCAGGACCAAGAGATCATGGGAAATGGTCACAGACACAGTTCTTACCTGAAGATCCATTCTCTCTTCCAAATTCTTCTTCATTATTTTCCAACTATGGCTCCATACCATACCCTCCTTCGAAGGTGGATATTGCACTAGAATGTGCCAGGATGCAGCATAGGTTTTCTCCGATGGAGGACTTTCCTTCTGAACTGAAGATGCAACCACAACATGGTGGAACTAAAAATGAAACTGATGAATTATTACAGGAGATTCTTTCAGTTGCTCATGCCTCTCAGGAACTCATAAACCAGCCTTCTAGCTATTCTTCTCACGCATGGGGTACTACTAGTACTGCAAACCAGCATTATGCTCCCTCTGAACAAGATGATTTCACTTTCATGGTTGGCAGAGATAGTTCTGCTAATGATTGTAACTACTATAACAGTGCCTGCTGGGAAGATCCAGTAAACACTAGGTCGATAGAGATTGGAGATCTAGATGATGATTTCAAAGCAGGGAGGCTCGTTGAGAATTTAAGATGGGTTGGCATGTCAAGCAAGGATTTGGAAATTAAGGGCTATATGGAAGATCAGAAAATTGTTCCAATTGAGGATATTTCAAGTTTCCGAGCAAACAGGGAGGGTAATGAAGCGCTGCAAGAATGTGGTAATCAGCAAGAAAATAGCAGCAAGGAACTCGATGACACTGACATAAACGACATCTCATTAGGGTTCATCAACGAGGATGACGCTAATAATGAGAACTTGATAGATGAAGAAGGCAATTATTCGAGTTCTCCAAGCTTTGAGGTGGTCGAAGAAGTCAAAGTCAGCCATGGAATGTTAATGTCCACAAGACAAGTAGCTGACACATTCTTTCACCAAATTGTTCCTTCACAAACCCTCAAGGTTCACCTCAATCCAGTGATAATGGCTAACAATTATCACTCATCAGTGGAGAACATAGAGACTACAGTTTCTTTATTCAGAAACCTGAAGGCCTGTGTGAAGACAATAACAAGTCCCATCGTACTCATATTTTCGCTTTTGCTGATGCACTGTATCTATTATTCGGATTCCGATCAGGATGTGAAGGAGAGAAGTTGGAGTGGTACAGCTAATAATTGTAATAGCAGCTTGAAGAGAATGAGAGAATCTGATGAAGATGATGAGAAAATCAAGGGGGACAATGAGAAGGAAGAAGTTTGGTTTGTGAGCATCAAAAGTGGGGAAGGATTCAGTGTGGTGTTGAAGAAGATAGGCATTTTTCTCACAGTTTCTTTTGCTCTTTGTACCATGTGGGCTAACCTCATCATAGTTCATTAA 1953 0.4204 MAPVSLPPGFRFHPTDEELVAYYLKRKINGHKIELEIIPEVDLYKCEPWDLPGKSLLPGKDLEWYFFSPRDRKYPNGSRTNRATKSGYWKATGKDRKVNSQSRSVGMKKTLVYYRGRAPHGCRTNWVMHEYRLDERECEVASGVQDAYALCRVFKKTAVITTKIGEHYGNQIMNTSDQSSSIELYSEGKSGEDFESSDYLMPLDHSSPHIGNNPPSGPRDHGKWSQTQFLPEDPFSLPNSSSLFSNYGSIPYPPSKVDIALECARMQHRFSPMEDFPSELKMQPQHGGTKNETDELLQEILSVAHASQELINQPSSYSSHAWGTTSTANQHYAPSEQDDFTFMVGRDSSANDCNYYNSACWEDPVNTRSIEIGDLDDDFKAGRLVENLRWVGMSSKDLEIKGYMEDQKIVPIEDISSFRANREGNEALQECGNQQENSSKELDDTDINDISLGFINEDDANNENLIDEEGNYSSSPSFEVVEEVKVSHGMLMSTRQVADTFFHQIVPSQTLKVHLNPVIMANNYHSSVENIETTVSLFRNLKACVKTITSPIVLIFSLLLMHCIYYSDSDQDVKERSWSGTANNCNSSLKRMRESDEDDEKIKGDNEKEEVWFVSIKSGEGFSVVLKKIGIFLTVSFALCTMWANLIIVH 650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4979g00021 650 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 5 278 - -
Pral4979g00021 650 FunFam Nac domain-containing protein 86 15 159 - -
Pral4979g00021 650 SUPERFAMILY NAC domain 4 156 IPR036093 GO:0003677|GO:0006355
Pral4979g00021 650 Gene3D NAC domain 15 160 IPR036093 GO:0003677|GO:0006355
Pral4979g00021 650 ProSiteProfiles NAC domain profile. 6 156 IPR003441 GO:0003677|GO:0006355
Pral4979g00021 650 MobiDBLite consensus disorder prediction 209 228 - -
Pral4979g00021 650 Pfam No apical meristem (NAM) protein 7 133 IPR003441 GO:0003677|GO:0006355
Pral4979g00021 650 MobiDBLite consensus disorder prediction 206 228 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4979g00021 Pral-Chr4979 102249 105933 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4979g00021 1 642 NAC Transcription Factor Family AT1G65910 44.328 5.68e-166 487
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pral4979g00021 NAM 1.5e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4979g00021 - - pcin:129318732 1116.68