Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pral4979g00020 | ATGACAATGGGTGACGCCGAGTCCTTTGCAGCATTCCCATTTGATAGAGCTGTCGAACAGGCAATTGTATCTATAAAGAAAGGTGCATACTTACTGAAGTGTGGACATAGAGGAAAACCCAAGCTCTGCCTTTTTAGACTTTCTCCAGATGAGAAAACTTTGATTTGGTGTTCTGGGCAAAAAGAAAAGCATTTGCAACTGAGTGAAGTCACAAGAATTGTTCAAGAGCAGGGAAATATAAGGTCCCAGAGACAAAGCCAACCTGAAAAAGACTGCCATTCATTTTCACTAATCTATGCAAATGGTGAACGCTCACTTGATTTGATATGCAAGGACAAAGCACAGGCTACCTCTTGGTTAGTGGGATTGAGAGCTGTGATGTCTAGGCCACAGCATTCAAGACCGTTAAGTAGTTTAAGAACCCGTAAAGGAGTGCAGAGTTGTGTAAATAGTCCAGCTGGGATATTTCGGAGAAAGAAAAATCTTGGTCTCCTGCAGGAGACTGTTGAATTTTCTCAGGTACAAAGCTTACATGCGAGTCCTAATTTCTCACTTTCAGAAAGATGCTTTTCTGAGGGCTTATCGGATGCATCTGATAGTATTTATTCTTTAGAGTCTTTCCCGTACAATTCTAGGAGCACAATGGATATTACAGTCCCAGGTTCTGCACATGATGATCCAGATTTTGTCAATAAAAATGGTTCAATATATGCTGACACAGGGTATGCGAAGAATTCATCCTATAGGCGTCTGCCTCCTCCTACTTCTTCTCATGTAGGAAAAAACAATATATTGAAGGATGTCATGGTATGGGGTGAAGGGATAGTAGGAGGTGGTAATAACAGGTCTGTAAATCAGCATAATGGTCATAGTACGTTGCCAAAGTTACTGGAATCCACCATGATGCTTGATGTACAAAATATAGCTTTAGGAGGAAAGCATGCTGTCTTAGTCACCAAACAAGGGGAAGTGTTCTGCTGGGGTCAAGGGAAAGAGGGAAGGCTGGGGCACAAAATTGACATTGATGTTAGCTCTCCCAAAATTGTTGATTCTCTTAATGGGATCCATGTAAAGTCTGTTGCCTGTGGTGAGTATCATACATGTGCTCTGACAGACACTGGTGTAGTATATACATGGGGAAATGATTGTGGTTGTACAGATTCTGTAGGTTATGCCAAAAGTAGAAGTCAGTGGATACCACATAAACTTTCGGGACCTCTGGATGGAATTCGTATTTTTAGTATTGCTTGTGGGGAATGGCATACTGCAATTGTCTCTTGCTGTGGAAGACTATTTACATATGGAGATGGTACTTTTGGAATTCTAGGGCATGGCAATCTTCAGAGCATTTCTCAACCAAAAGAAGTTGAGTCTCTTAAAGGTAAGCGAGTGAGGTCTGTTGCTTGTGGATCATGGCACACGGCAGCTATTGTAGAAATCATGACTGCCCGATGTAGATACAGCACTTGTAAGCTATTTACCTGGGGTGATGGAGATGGTGGGCGGCTCGGACATGCGGATAATGGAAGGAAGCTTTTACCAACATGTGTTACACAACTTGTGGATTATGACTTTGTTCAAGTATCTTGTGGAAGAGTGTTGACTGTGGCACTTACTAACTTGGGTAAAGTTTTTACCATGGGAAGTGAGGTGCATGGACAGCTAGGAAACTCTCATGCTAAGGATAAGACCGTGACTCTTGTCCAAGGACACTTGAAACAGGAGTTTGTTAAGCAGATATCATGTGGTTCATATCATGTAGCTGTGTTGACATCTGCAGGCAGTGTCTATACATGGGGCAAGGGAACACATGGGCAGTTAGGGTTGGGTGATACTAAAGACAGATACTCACCTTCTTTTGTTGAGGCTCTAAAAGATAGGCAGATAGAGAGTATTGCATGTGGGTCATGCTTCACAGCTGCAATTTGTTTACACAAAGCTGTTTCTATTGCTGGCCAGTCAGCTTGTAGCAGCTGTGAGCTTCCATTTGGGTTCAGAAGAAAGAAGCATAACTGCTATAACTGCGGTCTTCTCTTTTGTAATTCATGTAGCACTAACAAAGTTACAAATGCATCTCTAGCCCCGAGTAGGAACAAGGCTTTTCGGGTTTGTGATCAGTGCTTTCATAAATGCCAAGGAATTGCTCAATCACCTAAGGTATCGAAGTTGCAAAGTTGTACCACTATGCAGCAACTGAAGCGCCGGAATAGATTTCCTGATCTGACAGAAGATGGAGGGGAAACAGCAGTATCACCAGGTCCTCTGTCATCTTTCAGTCAATCATGCTACATGAAAAACATGCCTAGCGGAAGGAAGGACTGGAAAAATCAACAAGAAGGCCAGAAACATGTAGAAAACTTTTCTTCAGTGTTGGGTGGGATGCCACAATGGGGGAAAGTTTCCTGCCCTGATATATTTAAAACAAACTGTACAGAAAATTCTTTCATGCACGTTTCTTCATTGAAAAATAAATTAGCTTCTTCTAATCCGTTGAGACTAGAATCTACAGTATCCAGGATCCCTAATGGAGAGAAAGATATGCCAAAGTCTGAGAAAGTACTTGTAGAAGAAGTTCAGAGGCTGAGAGCTATGGCTGGGAAGCTTGAAGAGAAATGTAAGCTCCAAAACTGCATAATACAAGAATGTCAACAAAAGATTGAGAAGAGTATGTCGCAGGCGAAGGAGGAAGCTGCTAAATGCAGGGCAGCAAAAGAGGTCATAAAAGTTTTGACGTCAAAACTTCAAACAAAATCAGAAAAAGCCGATGCTGTACAAGAAGGAAAGGTTGGGGTAAACGAATGTGTGCCTTATCTTTCATCCGTGCTCACGGATGTTGATACTCCAAAAGATTGCAACTTAGACATTCAATCTGACTCTCCTATAGTATTCTCTGACAAATTAAGATCCAAATTTGGTAGAAGCAAAATCTTCCAAGGTGGTAAATCCAGGGAGGATTCTCTAGCCAGTGGAGTGCAGTCTCAGCTAGATGGTAAGAAAGGATCAAATGATGAATGGATAGAACAGTACGATCCCGGTGTGTACATCACTCTCACTTCCTTACCATGTGGCCAAATTGGCCTTAAAAGAGTCAGATTCAGCCGGAAACGATTCTCTGAAAAAGAAGCAGAGCAGTGGTGGGAAGAGAATCAAGCAAGAGTGTGCCGTGATTATGGGATCGAAGGATACACTAACAGCAGCCAAAAGCAAGTGTAA | 3213 | 0.4217 | MTMGDAESFAAFPFDRAVEQAIVSIKKGAYLLKCGHRGKPKLCLFRLSPDEKTLIWCSGQKEKHLQLSEVTRIVQEQGNIRSQRQSQPEKDCHSFSLIYANGERSLDLICKDKAQATSWLVGLRAVMSRPQHSRPLSSLRTRKGVQSCVNSPAGIFRRKKNLGLLQETVEFSQVQSLHASPNFSLSERCFSEGLSDASDSIYSLESFPYNSRSTMDITVPGSAHDDPDFVNKNGSIYADTGYAKNSSYRRLPPPTSSHVGKNNILKDVMVWGEGIVGGGNNRSVNQHNGHSTLPKLLESTMMLDVQNIALGGKHAVLVTKQGEVFCWGQGKEGRLGHKIDIDVSSPKIVDSLNGIHVKSVACGEYHTCALTDTGVVYTWGNDCGCTDSVGYAKSRSQWIPHKLSGPLDGIRIFSIACGEWHTAIVSCCGRLFTYGDGTFGILGHGNLQSISQPKEVESLKGKRVRSVACGSWHTAAIVEIMTARCRYSTCKLFTWGDGDGGRLGHADNGRKLLPTCVTQLVDYDFVQVSCGRVLTVALTNLGKVFTMGSEVHGQLGNSHAKDKTVTLVQGHLKQEFVKQISCGSYHVAVLTSAGSVYTWGKGTHGQLGLGDTKDRYSPSFVEALKDRQIESIACGSCFTAAICLHKAVSIAGQSACSSCELPFGFRRKKHNCYNCGLLFCNSCSTNKVTNASLAPSRNKAFRVCDQCFHKCQGIAQSPKVSKLQSCTTMQQLKRRNRFPDLTEDGGETAVSPGPLSSFSQSCYMKNMPSGRKDWKNQQEGQKHVENFSSVLGGMPQWGKVSCPDIFKTNCTENSFMHVSSLKNKLASSNPLRLESTVSRIPNGEKDMPKSEKVLVEEVQRLRAMAGKLEEKCKLQNCIIQECQQKIEKSMSQAKEEAAKCRAAKEVIKVLTSKLQTKSEKADAVQEGKVGVNECVPYLSSVLTDVDTPKDCNLDIQSDSPIVFSDKLRSKFGRSKIFQGGKSREDSLASGVQSQLDGKKGSNDEWIEQYDPGVYITLTSLPCGQIGLKRVRFSRKRFSEKEAEQWWEENQARVCRDYGIEGYTNSSQKQV | 1070 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pral4979g00020 | 1070 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 467 | 477 | IPR000408 | - | |
| Pral4979g00020 | 1070 | ProSiteProfiles | Zinc finger FYVE/FYVE-related type profile. | 650 | 712 | IPR017455 | - | |
| Pral4979g00020 | 1070 | Pfam | FYVE zinc finger | 653 | 712 | IPR000306 | GO:0046872 | |
| Pral4979g00020 | 1070 | SUPERFAMILY | FYVE/PHD zinc finger | 653 | 721 | IPR011011 | - | |
| Pral4979g00020 | 1070 | CDD | PH_PLC_plant-like | 16 | 128 | - | - | |
| Pral4979g00020 | 1070 | Gene3D | - | 17 | 134 | IPR011993 | - | |
| Pral4979g00020 | 1070 | SUPERFAMILY | PH domain-like | 17 | 127 | - | - | |
| Pral4979g00020 | 1070 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 429 | 480 | IPR000408 | - | |
| Pral4979g00020 | 1070 | Coils | Coil | 851 | 871 | - | - | |
| Pral4979g00020 | 1070 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 490 | 541 | IPR000408 | - | |
| Pral4979g00020 | 1070 | ProSiteProfiles | BRX domain profile. | 1003 | 1058 | IPR013591 | - | |
| Pral4979g00020 | 1070 | SUPERFAMILY | RCC1/BLIP-II | 267 | 646 | IPR009091 | - | |
| Pral4979g00020 | 1070 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 594 | 642 | IPR000408 | - | |
| Pral4979g00020 | 1070 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 429 | 477 | IPR000408 | - | |
| Pral4979g00020 | 1070 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 542 | 590 | IPR000408 | - | |
| Pral4979g00020 | 1070 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 374 | 424 | IPR000408 | - | |
| Pral4979g00020 | 1070 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 492 | 538 | IPR000408 | - | |
| Pral4979g00020 | 1070 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 322 | 370 | IPR000408 | - | |
| Pral4979g00020 | 1070 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 594 | 645 | IPR000408 | - | |
| Pral4979g00020 | 1070 | PRINTS | Chromosome condensation regulator RCC1 signature | 415 | 431 | IPR000408 | - | |
| Pral4979g00020 | 1070 | PRINTS | Chromosome condensation regulator RCC1 signature | 531 | 549 | IPR000408 | - | |
| Pral4979g00020 | 1070 | PRINTS | Chromosome condensation regulator RCC1 signature | 305 | 318 | IPR000408 | - | |
| Pral4979g00020 | 1070 | PRINTS | Chromosome condensation regulator RCC1 signature | 324 | 340 | IPR000408 | - | |
| Pral4979g00020 | 1070 | PRINTS | Chromosome condensation regulator RCC1 signature | 589 | 610 | IPR000408 | - | |
| Pral4979g00020 | 1070 | PRINTS | Chromosome condensation regulator RCC1 signature | 431 | 445 | IPR000408 | - | |
| Pral4979g00020 | 1070 | PRINTS | Chromosome condensation regulator RCC1 signature | 374 | 390 | IPR000408 | - | |
| Pral4979g00020 | 1070 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 374 | 428 | IPR000408 | - | |
| Pral4979g00020 | 1070 | PANTHER | REGULATOR OF CHROMOSOME CONDENSATION | 62 | 915 | - | - | |
| Pral4979g00020 | 1070 | Pfam | Transcription factor regulating root and shoot growth via Pin3 | 1003 | 1057 | IPR013591 | - | |
| Pral4979g00020 | 1070 | Pfam | Pleckstrin homology domain | 19 | 125 | IPR001849 | - | |
| Pral4979g00020 | 1070 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 542 | 593 | IPR000408 | - | |
| Pral4979g00020 | 1070 | SMART | fyve_4 | 644 | 713 | IPR000306 | GO:0046872 | |
| Pral4979g00020 | 1070 | Coils | Coil | 879 | 899 | - | - | |
| Pral4979g00020 | 1070 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 322 | 373 | IPR000408 | - | |
| Pral4979g00020 | 1070 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 658 | 712 | IPR013083 | - | |
| Pral4979g00020 | 1070 | Gene3D | - | 488 | 657 | IPR009091 | - | |
| Pral4979g00020 | 1070 | Gene3D | - | 221 | 487 | IPR009091 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Pral4979g00020 | Pral-Chr4979 | 92574 | 99468 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Pral4979g00020 | 966 | 1062 | Major Intrinsic Protein MIP | AT1G31880 | 39.394 | 1.10e-11 | 65.9 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Pral4979g00020 | - | - | adu:107481014 | 1407.51 |