Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4979g00018 ATGGCTATCCAGGATCATAATGAAGTTTCCGGATACAACGGCCTTCCACTAGAAACGGAAGTATTTCTGAGTTCTGGACTACGTTCTGCGTCCCTTGTTCAACCAAACGACAAGATTTCTTGTGGGAAAGACCATGCTCCAAAGGTCAGGAAACCATATACCATCACGAAACAGAGGGAGCGATGGACAGATGAAGAGCATAACAAATTCCTTGAAGCTCTGAAGCTCCATGGCAGGGCATGGCGAAAGATTGAAGAACATGTTGGCACAAAGAGCGCAGTTCAGATTCGAAGCCATGCTCAGAAGTATTTCACAAAGGTTCTTCGTGAGACTGCTGGGAGCAGCATAAGCTCAGTGGAGTCCATTGAAATCCCACCGCCACGACCAAAGCGAAAGCCTTCTCATCCTTACCCTCGGAAGCTGGTCGAATTCCCTGATAAAGCAATCTCCAACGCAGGCCAGCCAATGAGGTCTAATTCTCTCAAGTCATCAGAATCAGATCAGGAAAACCAGTCTCCGAAATCAGTGTTATCTGCGTTTGGTTTAGACACTCCCGGATACTCTGATTCATATAAACCAAATGGAAGTCCATCAGAGGAAGATGGTTCTGCCCCGAATGCCCATTCATCTCCTGATCTACAAACTCTTCAGAAATTTGAGCTTTTCCCTAGAGAGAGTGTTTCTACCAAAGAAGACGCAGCAGAAGAAACTTGTGGTCGGACTTTCAAGCTTTTTGGGACGACTCTTCTGGTAACAGATCCGACAATGAAGAATTCAGATATAACAGAAGCTCCTGCTGGTTTTGCTCCTTGGGGGAGGGAAGTTGAAGATAAAGTTGAAAAGGAAGTAGATTGGTGTGGTTCAACCATTACTAGCTCAATAAGTGATGGGGACAATGATGAAAACCCAGATATCGAAGCCAGAAGTCACATGAATCCCTACAGAAAGGGAGAAAAATTGAGTCTTTTTGGGTACTTGACAACACCCAGAGAACCATCAGCCATATCTGAAATATTGCAGAGGCCTATAGGGTTTGTGCCATATAAAAGATTCATAGCAGAAAGAGAAAACCAGCCCTTGCCTATAACAGTGGAGGAGAAGGAAGGCCAACGCCTTCGCCTTTCATTATTATAG 1134 0.4489 MAIQDHNEVSGYNGLPLETEVFLSSGLRSASLVQPNDKISCGKDHAPKVRKPYTITKQRERWTDEEHNKFLEALKLHGRAWRKIEEHVGTKSAVQIRSHAQKYFTKVLRETAGSSISSVESIEIPPPRPKRKPSHPYPRKLVEFPDKAISNAGQPMRSNSLKSSESDQENQSPKSVLSAFGLDTPGYSDSYKPNGSPSEEDGSAPNAHSSPDLQTLQKFELFPRESVSTKEDAAEETCGRTFKLFGTTLLVTDPTMKNSDITEAPAGFAPWGREVEDKVEKEVDWCGSTITSSISDGDNDENPDIEARSHMNPYRKGEKLSLFGYLTTPREPSAISEILQRPIGFVPYKRFIAERENQPLPITVEEKEGQRLRLSLL 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4979g00018 377 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 54 108 IPR017930 -
Pral4979g00018 377 CDD SANT 61 104 IPR001005 -
Pral4979g00018 377 SMART sant 58 106 IPR001005 -
Pral4979g00018 377 ProSiteProfiles Myb-like domain profile. 54 104 IPR001005 -
Pral4979g00018 377 MobiDBLite consensus disorder prediction 115 211 - -
Pral4979g00018 377 FunFam protein REVEILLE 6 isoform X1 61 109 - -
Pral4979g00018 377 Gene3D - 61 107 - -
Pral4979g00018 377 MobiDBLite consensus disorder prediction 189 211 - -
Pral4979g00018 377 MobiDBLite consensus disorder prediction 125 142 - -
Pral4979g00018 377 PANTHER SWI/SNF COMPLEX-RELATED 42 289 - -
Pral4979g00018 377 ProSiteProfiles SANT domain profile. 57 108 IPR017884 -
Pral4979g00018 377 MobiDBLite consensus disorder prediction 152 178 - -
Pral4979g00018 377 Pfam Myb-like DNA-binding domain 59 104 IPR001005 -
Pral4979g00018 377 NCBIfam myb-like DNA-binding domain, SHAQKYF class 57 106 IPR006447 GO:0003677
Pral4979g00018 377 SUPERFAMILY Homeodomain-like 53 106 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4979g00018 Pral-Chr4979 78085 80966 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Pral4979g00018 Myb_DNA-binding 1.7e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4979g00018 - - pcin:129299230 547.354