Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4978g00006 ATGAAAGAAAACTTTGATCTTGAGGTGGAGGCCTCCGCAGAAAGTGAATTTGAAGTCAGCAGCCAGGTTGCTTCCAATATATCCACTCAAGAAACTATTGCGGGTCCTTGTATTGATCAAAACCTGTCCAACTCTTCCACCCCAGGAATTCCAACAGAGATTATTGATGGAAATGCAAATCCCATATCACTTGACCTGACTCTGAATTTAAATAATAAGGAGATAGCAGGTTCAAGAGATTCCGTACGACTCTCGTTCTCAAGCACCAGTGAGAGTAGCAATGAACCTGCCTCTCAAACTACAGAAGCGACCATTGCCAGAGTTTTCTCATGCAATTACTGTCAACGCAAGTTCTTCAGTTCGCAGGCTCTTGGGGGCCACCAAAATGCACACAAGAGAGAAAGATCATTGGCAAAGCATGCCATGAGGATGGGTCTTTTCTCTGAGAGGTATGCAAGTCTCGCGTCTCTCCCTCTTAATGGTTCTTCCAGATCATTGGGAATAAAAGCGCACTCCTCACAGCACTATTGCTTTCCACCAACAATGAAGGTTCAAGAGATGAAAAGCAATGCAAGATTTGAGATAGGATATTTTGGTCAGCCAATGTTCTTGGAGGATAATGAACCTGGACTTGTCTGGCCTGGTAGTTTCCGTCAGATTGCAGGCATCGGTGATGATCATCAGAATTTTCTGCTGACTGAAAGTTCTGGTTTGAGTTTTAGGGATATGAATCCACCAGTAGACATAGAGAAGTCCACCCCAGATTTGACATTAAAACTTTGA 783 0.4355 MKENFDLEVEASAESEFEVSSQVASNISTQETIAGPCIDQNLSNSSTPGIPTEIIDGNANPISLDLTLNLNNKEIAGSRDSVRLSFSSTSESSNEPASQTTEATIARVFSCNYCQRKFFSSQALGGHQNAHKRERSLAKHAMRMGLFSERYASLASLPLNGSSRSLGIKAHSSQHYCFPPTMKVQEMKSNARFEIGYFGQPMFLEDNEPGLVWPGSFRQIAGIGDDHQNFLLTESSGLSFRDMNPPVDIEKSTPDLTLKL 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4978g00006 260 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 61 186 IPR044246 GO:0009788
Pral4978g00006 260 Gene3D Classic Zinc Finger 86 155 - -
Pral4978g00006 260 SUPERFAMILY beta-beta-alpha zinc fingers 107 136 IPR036236 -
Pral4978g00006 260 ProSitePatterns Zinc finger C2H2 type domain signature. 111 131 IPR013087 -
Pral4978g00006 260 ProSiteProfiles Zinc finger C2H2 type domain profile. 109 136 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4978g00006 Pral-Chr4978 48597 51097 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4978g00006 91 260 C2H2 Transcription Factor Family AT1G66140 47.959 4.96e-44 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pral4978g00006 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4978g00006 - - gmx:100794851 333.183