Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4978g00005 ATGGTTTTGTCGTGGTCCAGAAAACGAGTTTTTCGCCGTGCCCGCAAAGGAAACGCCGCCACCGGAGACTTGGACGTCGATGTCGAGGTTGTTGTTCCCACCCACTTCCGGTGTCCGATTACCCTGGACTTGATGAGAGATCCGGTGACCTTATCCACCGGAATCACCTATGACAGGGACAGCATCGAGAAGTGGGTCGAGTCTGGAAACCGGACGTGCCCCGTCACCAATCAGCCTTTGATTAGCTTCGACATGATTCCTAACCACGCCATACGTAGGATGATCCAAGACTGGTGCGTCGAGCATCGTTCCCACGGTATCGAGAGAATCCCCACGCCGAGAATCCCGGTCACGCAGTACGAGGTTTCCGAGATCTGTACCAAAATAATGTCGGCAACTCAACGCGGAGACGACAGCAAGTGCCAGCAGTTGGTGGATAAGATCAAGATCTGGGGCCGAGAAAGCGAGAGGAACAAGAAGTGTATCGTTCAAAACGGGGCTGCCACTGCATTAGCCAACGCCTTCAGTTCTTTTTCAAACGCTTCGATTGAGAAAAACGTAGGCCTTTTAAAGGATATTCTGGGGATCTTAACATGGGTTCTTCCAAAGGGGCAAGAGGGTTATGCTCAAATTCAAACTCAGTCATTGCTGAGTTCTGAAGCGTCTTTACGTTGCATGGTTTGGTTCCTTAACAGCAAAGACCTCTCGTCAAGGCAAAACGCAGCTTTAGTTCTGAAGCAAGTACCTATAGAGCCATTGGCAAAAACTGAAGGTGCGATCGAAGCCTTAGTCAAGATGATCAAGGAGCCCGTAGGTCCTCCTGCAACAAAAGCAAGCCTCAAAGCAATTTTCCAGATGGTTTCCTCATCAAATGAGAAAGAGAGAATCATCAAAAGATGTGCGGAACTAGGCCTAGTTACGTTGTTGCTCGAAGCACTTGTGGACGGAGGTAGAGGGATATGTGAAAAGGCTTTGGGAGTTTTGGATTGTATATGTGATTACGACGAAGGGAAGGCAGTGGCAAAGGCCAATATGTTAACCTTGCCTCTTGTAGTGAAGAAGATATTGAGGGTTTCAGGGTTGGCTTCTGATTTTGGAGTGTCAATTCTTTGGAAACTTTGTGACAAGATGGATGAAGATACGTTGAAGGAGGCAATTCAAGTGGGTGCGTTTCAGAAGGTTCTGGTTTTGTTGCAGGTTGGGTGTGAAGAGAGGACGAAGGGAAAAGCCACTGATTTGTTGAAGTTGCTGAATGCTTACAAGAACACAGTGGAGTGTGTTGATTCGTCATTGGATTTGAAGCACCTTAAGAAGCCCTTTTGA 1323 0.4777 MVLSWSRKRVFRRARKGNAATGDLDVDVEVVVPTHFRCPITLDLMRDPVTLSTGITYDRDSIEKWVESGNRTCPVTNQPLISFDMIPNHAIRRMIQDWCVEHRSHGIERIPTPRIPVTQYEVSEICTKIMSATQRGDDSKCQQLVDKIKIWGRESERNKKCIVQNGAATALANAFSSFSNASIEKNVGLLKDILGILTWVLPKGQEGYAQIQTQSLLSSEASLRCMVWFLNSKDLSSRQNAALVLKQVPIEPLAKTEGAIEALVKMIKEPVGPPATKASLKAIFQMVSSSNEKERIIKRCAELGLVTLLLEALVDGGRGICEKALGVLDCICDYDEGKAVAKANMLTLPLVVKKILRVSGLASDFGVSILWKLCDKMDEDTLKEAIQVGAFQKVLVLLQVGCEERTKGKATDLLKLLNAYKNTVECVDSSLDLKHLKKPF 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4978g00005 440 Gene3D - 114 436 IPR011989 -
Pral4978g00005 440 ProSiteProfiles U-box domain profile. 31 105 IPR003613 GO:0004842|GO:0016567
Pral4978g00005 440 SUPERFAMILY ARM repeat 148 404 IPR016024 -
Pral4978g00005 440 PANTHER WDSAM1 PROTEIN 29 421 IPR045185 GO:0061630
Pral4978g00005 440 SMART Ubox_2 35 98 IPR003613 GO:0004842|GO:0016567
Pral4978g00005 440 CDD RING-Ubox_PUB 33 85 IPR045210 -
Pral4978g00005 440 SUPERFAMILY RING/U-box 30 108 - -
Pral4978g00005 440 FunFam RING-type E3 ubiquitin transferase 32 103 - -
Pral4978g00005 440 Pfam U-box domain 32 103 IPR003613 GO:0004842|GO:0016567
Pral4978g00005 440 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 15 109 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4978g00005 Pral-Chr4978 39493 40962 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4978g00005 29 440 U-box Gene Family AT5G37490 47.255 6.04e-124 365
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4978g00005 - - qsa:O6P43_014260 563.148