Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4978g00002 ATGTCTTTCTCTCTCTTTGAAGCGTGTAGGAAGAGAAAGAGATGGCCCAAGGTTTTCAGGTTTCACTCTTTCGCCGACCCTGGTTGCCCCATCAGTCCTAACGGACCTTTTAGAGATAACATTCGGCTCTTTCTTCAAGAATGTGGAGAGCTTGAAGATTTCCAGATCCAGGGCATGCCTCTGTGGACCACCTTTCTTATTCACGAGAAATCAAACAGTATGACTCCTCTTTACACTATTGAAGAGGATGTCTACCACTCTACGCACCCTTTCTGCGACCATTGCAGATGTGCGGGCTGGAGCGGCCATTTTGTGTCGAAGAGAAGGTACCATTTCATAATCGCCACCGATAATAAGCCATTGAATGAAGGTTCTCTCGATAACCAGAGTCATCTCTTGCATGGAATGATTCATTGCAATGGTTACGGCCATTTGCTCTGTGTTAATGGCATTGAAGGGGGTTCTAAATTTCTCAGTGGCAGAGAAATCATGGATCTGTGGGACAGGATCTGTACTATTCTCCGAACAAGGAAAATCGCAGTTGAAGATACATCAAAGAAGCGTTCAATGGATCTTCGCCTGCTTCATGGAGTTGCTTATGGCCATTCTTGGTTGGGTAGGTGGGGTTACAGATTTTCTCGTGGAAGCTTCGGTGTCACAGAGCACAATTATAATGCAGCAATCGAACTTCTAAGTTCGTTAGAACTTGATGAGATCGTTCAATATTTTGGTAATACAATGTGCCATAAAGAAATCAAACAAATAATTCGCCACTATAGAGACATGAGTGAAACCCAGTTGATTACAATCAAGGATCTTCTCAGGTTTATGCTTACCGTCAAGTCTCGAACTCCTCCTGCACCCAAGAGACTAATAGTCAATGTCACTACTCCTCCTCCTTCAACCTTCTGTCCAAAAAACTCAACGAGATTTGCAATGCCAAGCAAACAAAGCCTGTTAAAGGAAAAATCAGTGAGGTACAAAAAGTTCAGTTCAGCAGTGGCTAATATGGATAGTAGGTGGCCTGCCAGGCGACTAGAATACGCAGCCCAAGTGATAGTAGATGCATTGAAGGAAAACAAAGCAAATAGTTCGTGTTCTGGGGGGATGACTAGGCAAGATGTAAGAGATGCAGCTAGGCTCCACATTGGTGACACAGGCTTGCTGGATTATGTGCTGAAATCACTGAATAATATGATTGTTGGAAACTGCGTTGTCCGGCGAATGGTCAACCCGACAACTCGAATCCTAGAGTATAACATTCATGAGCTGGGAAATGGGTCTAAATCTCCTCAACTACATCCTGGGCTACAGGTTTTTAATTTTAAGGAGCCTCCAGCAGAATCAGAACCAGTGCCAGGAATTGATGTTTACGGTGATGTAGCTTATCTGTACAAGAATGTCCTATTGGGCTACCCAGATTCAGAACAAGCGGACTTGGCGGTTCAAACAATTCTAGACAGTAGGCATTTTGTGAAGGAATGGACACTGATCGATGAAATAGAGCAAGTTTTGACATTCATATGCCGCTTGATACCCAACTTCGTCGATGATAAACGAGAGTTGAACAAGGAAGTATCCCCAGGTGAGATAGTGATGGTTCCCCTGCACGCAACAGTCCGAGACCTGAAGCAAGCAGCTGAGATTGCTCTGAGGGATACTTACTGTATTGCAGAGAGAATCATGGTGATAGAGATCGCAGAGTTGGCGGGAATAAGTGATGAGGAAGTGCTTTTTGGAGTAGTGCAGTCTGGTGTGGATCTGTGTGTGAGGGGAATTGGTTTAGATTTGAATACTCCATTGAAGTATCAGGGAGGATCAGACAACTGGAAGGTGAGATGTGAATGTGGAGCTCAAGATGATGATGGCGAGAGAATGGTGGCATGCGACATTTGTGGGGTGTGGCAGCACACACGGTGTTGCGGGATAGATGACTCAGAGACTGTGCCACCATTGTTTGTGTGCTCTGGGTGTTGTGATTCGCTTGTACCTCCAAGGGTTGATTCAGCCTTCAGCAGCAACAATAGCATGGACTGTGCGGATGATTTTCTGATTTCCACAGAGCCTAATAGCTTTCTGGAATTTGGGTATGGGTACTGA 2100 0.4486 MSFSLFEACRKRKRWPKVFRFHSFADPGCPISPNGPFRDNIRLFLQECGELEDFQIQGMPLWTTFLIHEKSNSMTPLYTIEEDVYHSTHPFCDHCRCAGWSGHFVSKRRYHFIIATDNKPLNEGSLDNQSHLLHGMIHCNGYGHLLCVNGIEGGSKFLSGREIMDLWDRICTILRTRKIAVEDTSKKRSMDLRLLHGVAYGHSWLGRWGYRFSRGSFGVTEHNYNAAIELLSSLELDEIVQYFGNTMCHKEIKQIIRHYRDMSETQLITIKDLLRFMLTVKSRTPPAPKRLIVNVTTPPPSTFCPKNSTRFAMPSKQSLLKEKSVRYKKFSSAVANMDSRWPARRLEYAAQVIVDALKENKANSSCSGGMTRQDVRDAARLHIGDTGLLDYVLKSLNNMIVGNCVVRRMVNPTTRILEYNIHELGNGSKSPQLHPGLQVFNFKEPPAESEPVPGIDVYGDVAYLYKNVLLGYPDSEQADLAVQTILDSRHFVKEWTLIDEIEQVLTFICRLIPNFVDDKRELNKEVSPGEIVMVPLHATVRDLKQAAEIALRDTYCIAERIMVIEIAELAGISDEEVLFGVVQSGVDLCVRGIGLDLNTPLKYQGGSDNWKVRCECGAQDDDGERMVACDICGVWQHTRCCGIDDSETVPPLFVCSGCCDSLVPPRVDSAFSSNNSMDCADDFLISTEPNSFLEFGYGY 699
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4978g00002 699 CDD PHD_MMD1_like 614 658 - -
Pral4978g00002 699 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 601 662 IPR013083 -
Pral4978g00002 699 SUPERFAMILY FYVE/PHD zinc finger 606 664 IPR011011 -
Pral4978g00002 699 SMART PHD_3 613 659 IPR001965 -
Pral4978g00002 699 ProSitePatterns Zinc finger PHD-type signature. 614 658 IPR019786 -
Pral4978g00002 699 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 12 667 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4978g00002 Pral-Chr4978 26217 28677 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4978g00002 10 664 PHD Transcription Factor Family AT5G22260 32.815 3.71e-113 354
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Pral4978g00002 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4978g00002 K26271 - qsa:O6P43_014263 1001.89