Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4978g00001 ATGCCTGGTAATAGATTGACAGAGGAGGCGGTGACGGAGGAAAGAGAGGAGAAAAGGAAGCAGATGTTGTCGACTTCGAGATCGTCTTCGTCGTCGTCGTCGTCGTCTTCGGATGACAGAGAGTATGAACTTGAGGACCTGAGAGACAGGTTGAAATCGTCGCGAGGAAGCCGATTCCAATTGATTGAGAATGAGTTGAAGGAGCTCAACCAGAAGAAATTCAGTCGCCACGTCATTGATGGCATTCGAGGCTTATCCAAAGATTTCATTATTCATCCAGAGAACAGGTGGTATCGGGCATGGACAAAATTCATATTGCTGTGGGCAATATACTCATCCTTCTTCACCCCCATGGAGTTTGGATTTTTTCGTGGCCTAGATGAGGATCTCTTCATACTGGACATAATTGGTCAAGTTGCATTTCTTGTAGACATTATTGTGCAGTTCTTCCTTGCTTATAGAGACAGTCAGACCTATCGTATGATCTACAAGCGAGCCCCTATAGCTCTGCGGTATCTAAAGTCTAGCTTTATCTTTGATCTTCTTGGATGTATGCCTTGGGACATCATCTATAAGGCTAGTGGAAGAAGAGAAGGAGTAAGGTATCTTCTGTGGATAAGATTATATCGGGTGCGGAAAGTTACTGAATTTTTCCAGAGACTCGAGAAGGATATACGTATCAATTACATGTTTACTAGGATTGTGAAACTTATAGTTGTTGAACTCTACTGCACCCATAGTGCTGCCTGCATCTTCTACTACTTGGCCACCACACTACCTCCATCCCAAGAGGGGTACACATGGATAGGAAGCTTACAGCTTGGCGGTTACAGTTACATGAATTTCAGGGAAATTGATCTCTGGAAGCGCTACACAACATCTTTGTATTTCGCCATTGTTACAATGGCCACTGTCGGCTACGGAGACATACATGCAGTAAATATGAGGGAGATGATATTCATAATGATATATGTTTCGTTTGATATGGTTCTTGGTGCTTATTTAATTGGTAACATGACGGCTTTAATAGTCAAAGGATCAAAAACGGAAAAGTTTAGGGACAGAATGGCAGATCTTTTGAAATACATGAATAGAAATAAACTTGGAAGGGACATTCGTGAACAAATAAAAGGCCATATGCGCTTACAGTATGAAAGTAGCTACACTGAGCCAGCAGCCATTCAGGACCTCCCCATTTCAATTCGCTCCAAGATATCCCAAGACTTATATTTGCCGTACATCGAGAAGGTCCCTCTCTTTAAGACTTGCTCTTCAGAATTTATTAATCAGATCGTCACAAGGCTCCATGAGGAATTCTTTCTCCCAGGAGAAGTGATATTGGAACAAGGAAATGTTGTAGATCAACTATACTTTGTCTGTCATGGTGTGCTGGAGGAAGTAGGCCCCGGTGAAAATGGATCTGAAGAGACTGTTTCACTTTTAGAGCCTAACAGTTCATTTGGGCAAATATCTATTCTATGTAACATTCCTCAACCATATACTGTTCGGGTTTGTGAACTTTGTAGGCTTCTGCGGCTTGATAAACAATCATTTACGGATATCCTTGATATATACTTCTATGATGGGAGGAAAGTATTAAACAATCTTCTGGAGGGAAAAGACTCTAGTCGAGGTAAGCAATTGGAGTCAGATATCACATTCCATATTGGAAAGCAAGAAGCTGAACTTGCTTTGAAGGTCAATAATGCGGCTTTTAACGGGGATCTGAATCACATTAAAGGATTAATTCGAGCTGGAGCTGATCCAAACAAGGCAGATTATGATGGACGGTCAGCTTTGCATCTTGCAGCATCTAGAGGATTTGAAGACATCACCATTTTCCTTATTCAGGAAGGTGTAGAAATCGATCTGAGAGATAACTTTGGGAACACACCCTTACTTGAAGCTGTAAAGAATGGACATGATCGAGTTGCTTCTTTACTTGTTGGAAAAGGTGCTTCTATGAAAATAGAGGATGCTGGTAGTGTTCTATGTAATGCTGTTGCAAGGGGAGATTCAGATTACCTTAAAAGGCTATTATCTTATGGTATGGATCCTAACACGAAAGATTACGATTACCGAAGCCCTCTTCATGTTGCTGCAGCTGAGGGTTTATTCTTAATGGCAAAGTTGCTGATAGAGGCTGGAGCCAGCGTTTTTATCCAAGACAGATGGGGAAATACCCCTCTTGATGAAGCTAGGATGTGTGGAAATAAGAATCTGATCGAGCTATTGGAAGATGCGAGATCTGCTCAGTTGTCAAGATTCCCTCATCTTTCCTCAGAACTTACAGTGAAACTTCATCCCAAGAAATGTACAGTTTTTCCTTTTCACCCATGGGGTCCAAAAGAACATAGAAGACATGGGATTGTGCTATGGGTTCCACACACCATTGAAGAGCTTATCGAAACAGCAGCGGAGCAGCTTAATGTTTCTAGTGATTGTTCTATTCTATCAGAGGATGCCGGTAAAATTACTGATGCGAACCTCATTATGGATGGTCAAAAGCTGCACCTAGTCCATGAAACACATTAA 2535 0.417 MPGNRLTEEAVTEEREEKRKQMLSTSRSSSSSSSSSSDDREYELEDLRDRLKSSRGSRFQLIENELKELNQKKFSRHVIDGIRGLSKDFIIHPENRWYRAWTKFILLWAIYSSFFTPMEFGFFRGLDEDLFILDIIGQVAFLVDIIVQFFLAYRDSQTYRMIYKRAPIALRYLKSSFIFDLLGCMPWDIIYKASGRREGVRYLLWIRLYRVRKVTEFFQRLEKDIRINYMFTRIVKLIVVELYCTHSAACIFYYLATTLPPSQEGYTWIGSLQLGGYSYMNFREIDLWKRYTTSLYFAIVTMATVGYGDIHAVNMREMIFIMIYVSFDMVLGAYLIGNMTALIVKGSKTEKFRDRMADLLKYMNRNKLGRDIREQIKGHMRLQYESSYTEPAAIQDLPISIRSKISQDLYLPYIEKVPLFKTCSSEFINQIVTRLHEEFFLPGEVILEQGNVVDQLYFVCHGVLEEVGPGENGSEETVSLLEPNSSFGQISILCNIPQPYTVRVCELCRLLRLDKQSFTDILDIYFYDGRKVLNNLLEGKDSSRGKQLESDITFHIGKQEAELALKVNNAAFNGDLNHIKGLIRAGADPNKADYDGRSALHLAASRGFEDITIFLIQEGVEIDLRDNFGNTPLLEAVKNGHDRVASLLVGKGASMKIEDAGSVLCNAVARGDSDYLKRLLSYGMDPNTKDYDYRSPLHVAAAEGLFLMAKLLIEAGASVFIQDRWGNTPLDEARMCGNKNLIELLEDARSAQLSRFPHLSSELTVKLHPKKCTVFPFHPWGPKEHRRHGIVLWVPHTIEELIETAAEQLNVSSDCSILSEDAGKITDANLIMDGQKLHLVHETH 844
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4978g00001 844 Pfam Cyclic nucleotide-binding domain 439 523 IPR000595 -
Pral4978g00001 844 ProSiteProfiles KHA domain profile. 771 844 IPR021789 -
Pral4978g00001 844 ProSiteProfiles Ankyrin repeat profile. 628 660 IPR002110 GO:0005515
Pral4978g00001 844 SUPERFAMILY Ankyrin repeat 568 747 IPR036770 -
Pral4978g00001 844 ProSiteProfiles Ankyrin repeat profile. 595 627 IPR002110 GO:0005515
Pral4978g00001 844 ProSiteProfiles Ankyrin repeat region circular profile. 628 659 - -
Pral4978g00001 844 ProSiteProfiles cAMP/cGMP binding motif profile. 419 539 IPR000595 -
Pral4978g00001 844 MobiDBLite consensus disorder prediction 1 44 - -
Pral4978g00001 844 PANTHER POTASSIUM CHANNEL AKT1 67 840 IPR045319 GO:0005249|GO:0006813
Pral4978g00001 844 MobiDBLite consensus disorder prediction 8 23 - -
Pral4978g00001 844 Pfam Ankyrin repeats (3 copies) 664 745 IPR002110 GO:0005515
Pral4978g00001 844 Pfam Ankyrin repeats (3 copies) 569 659 IPR002110 GO:0005515
Pral4978g00001 844 ProSiteProfiles Ankyrin repeat profile. 692 724 IPR002110 GO:0005515
Pral4978g00001 844 Gene3D - 660 755 IPR036770 -
Pral4978g00001 844 Gene3D Helix hairpin bin 347 408 - -
Pral4978g00001 844 SUPERFAMILY Voltage-gated potassium channels 93 344 - -
Pral4978g00001 844 SMART ANK_2a 628 657 IPR002110 GO:0005515
Pral4978g00001 844 SMART ANK_2a 595 624 IPR002110 GO:0005515
Pral4978g00001 844 SMART ANK_2a 692 721 IPR002110 GO:0005515
Pral4978g00001 844 SMART ANK_2a 725 755 IPR002110 GO:0005515
Pral4978g00001 844 SMART ANK_2a 556 591 IPR002110 GO:0005515
Pral4978g00001 844 SMART ANK_2a 659 688 IPR002110 GO:0005515
Pral4978g00001 844 PRINTS EAG/ELK/ERG potassium channel family signature 335 344 IPR003938 GO:0005249|GO:0006813|GO:0016020
Pral4978g00001 844 PRINTS EAG/ELK/ERG potassium channel family signature 134 144 IPR003938 GO:0005249|GO:0006813|GO:0016020
Pral4978g00001 844 PRINTS EAG/ELK/ERG potassium channel family signature 243 253 IPR003938 GO:0005249|GO:0006813|GO:0016020
Pral4978g00001 844 PRINTS EAG/ELK/ERG potassium channel family signature 291 308 IPR003938 GO:0005249|GO:0006813|GO:0016020
Pral4978g00001 844 FunFam Potassium channel KAT2 407 544 - -
Pral4978g00001 844 CDD CAP_ED 419 533 IPR000595 -
Pral4978g00001 844 Gene3D - 101 345 - -
Pral4978g00001 844 Gene3D - 552 659 IPR036770 -
Pral4978g00001 844 Gene3D Jelly Rolls 409 534 IPR014710 -
Pral4978g00001 844 Pfam KHA, dimerisation domain of potassium ion channel 770 838 IPR021789 -
Pral4978g00001 844 Pfam Ion transport protein 99 344 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Pral4978g00001 844 FunFam Potassium channel SKOR 99 344 - -
Pral4978g00001 844 ProSiteProfiles Ankyrin repeat region circular profile. 692 724 - -
Pral4978g00001 844 SUPERFAMILY cAMP-binding domain-like 347 536 IPR018490 -
Pral4978g00001 844 ProSiteProfiles Ankyrin repeat region circular profile. 595 627 - -
Pral4978g00001 844 SMART cnmp_10 419 537 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4978g00001 Pral-Chr4978 13610 24064 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4978g00001 666 745 Ion Channels AT5G37500 35.294 1.66e-08 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4978g00001 K21867 - gmx:100814385 1380.16