Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4972g00003 ATGTCGATGCTCAGAAGAAAAAAGATCATCAATTTGTTTTCAAGCTCTAAACTTTCCCAATTAATTTCTCATGAATTCGGTTTGATTCCTCAGTCAAAGCAATATCCTACGCACCCTTCTTCTGCTTTCCTTAAAACCCTGAACCCTTTTAGGGTTTTGCTATACTATGCACCGTATTCAACGCAGGCCTCCAAATTTCCCGAGTATGAGATGCCATCTGTTACCTGGGGTGTGATTCAGGGACGGAAAGAGAAGCTTGTTTCGAGGGTAATCATATTTGATTATCTAAAGGGTTTAGGAATCATTCCAGATGAATTGCATGACTTGGAGCTTCCTTCCACCGTTGAGGTCATGAGGGAGCGCGTAGAGTTCCTTCAAAAGTTGGGTTTAACAATTGATGACATTAACGAGTATCCTTTGATGCTTGGATGCAGTGTGAGAAAGAATATCATACCTGTGTTGGGGTACCTAGAAAAAATTGGGATTCCAAGGCCAAAGCTTGGCGAATTCTTAAAAAACTACCCACAAGTTTTACATGCAAGTGTGATTGTTGAGCTAGCTCCGGTTATTAAGCTCCTAAGAGGACTTGATGTGGAGAAACAGGATATTGGATTTGTGTTGCAAAAGTATCCTGAGCTTTTGGGGTTCAAACTTGAGGGTACAATGAGTACTTCAGTGGCTTATCTTGTTAGTATTGGCGTCAATCCCAGAGATATCGGTCCCATGGTGACACAGTACCCTTATTTTTTGGGGATGAGAGTTGGGACTGTGATTAAACCTCTGATTGATTACTTGGTCTCGTTAGGGCTACCCAAGAAAATTATAGCTAGAATGTTGGAGAAGAGGCCCTATATACTTGGTTACGATCTTCAGGAGACTGTTAAACCTAATGTGGATTGTTTGATTAGTTTTGGAATTAGGAAGGAAACACTGCCTTTAGTTATTGCTCAATATCCATCGATTCTTGGGTTGCCTCTCAAGGCCAAATTGTCTTCACAGCAGTACTTCTTCAGTTTGAAGCTTAAGATTGACCCTGAAGGATTTGCACGAGTGATAGAGAAGATGCCTCAGGTGGTTAGCCTTAATCAACATGTGATAATGAAACCAGTTAACTTCCTCCTCGCAAGGGCAATACCATCGCATGATGTGGCCAATATGTTGATCAGATGTCCTCAATTAATAGCAGCAAGAGTTGAGCTTATGAAGAACAGTTTTTACTTCTTCAAGAGTGAGATGGGGCGACCCATAAAGGAGCTTGTGGAATTTCCAGAATACTTTACATATAGCTTGGAGTCCCGGATCAAACCCAGATACCAGAAGATGAAAAGCAAGGGGATAAGATTTTCATTAAATTGGATGCTAAATTGTAGTGACCAGAGATTTGAAGAGAGATTGCAAGGTAATTACATTGAAACTGAAACTACAGGTCCATCTTTTTGTATGGGTGGGAAGTTAGAGCTACCAGGCAATGAGATAGTGTCAGATGAGGAAGAAGAGAGTGATGACGAAGAACTATATAGACGAACTGTCTCTCTTTAG 1539 0.4094 MSMLRRKKIINLFSSSKLSQLISHEFGLIPQSKQYPTHPSSAFLKTLNPFRVLLYYAPYSTQASKFPEYEMPSVTWGVIQGRKEKLVSRVIIFDYLKGLGIIPDELHDLELPSTVEVMRERVEFLQKLGLTIDDINEYPLMLGCSVRKNIIPVLGYLEKIGIPRPKLGEFLKNYPQVLHASVIVELAPVIKLLRGLDVEKQDIGFVLQKYPELLGFKLEGTMSTSVAYLVSIGVNPRDIGPMVTQYPYFLGMRVGTVIKPLIDYLVSLGLPKKIIARMLEKRPYILGYDLQETVKPNVDCLISFGIRKETLPLVIAQYPSILGLPLKAKLSSQQYFFSLKLKIDPEGFARVIEKMPQVVSLNQHVIMKPVNFLLARAIPSHDVANMLIRCPQLIAARVELMKNSFYFFKSEMGRPIKELVEFPEYFTYSLESRIKPRYQKMKSKGIRFSLNWMLNCSDQRFEERLQGNYIETETTGPSFCMGGKLELPGNEIVSDEEEESDDEELYRRTVSL 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4972g00003 512 FunFam Transcription termination factor mterf4, chloroplastic 118 255 - -
Pral4972g00003 512 SMART mt_12 168 199 IPR003690 GO:0003690|GO:0006355
Pral4972g00003 512 SMART mt_12 132 163 IPR003690 GO:0003690|GO:0006355
Pral4972g00003 512 SMART mt_12 349 379 IPR003690 GO:0003690|GO:0006355
Pral4972g00003 512 SMART mt_12 312 344 IPR003690 GO:0003690|GO:0006355
Pral4972g00003 512 SMART mt_12 240 271 IPR003690 GO:0003690|GO:0006355
Pral4972g00003 512 SMART mt_12 276 307 IPR003690 GO:0003690|GO:0006355
Pral4972g00003 512 SMART mt_12 416 447 IPR003690 GO:0003690|GO:0006355
Pral4972g00003 512 SMART mt_12 204 235 IPR003690 GO:0003690|GO:0006355
Pral4972g00003 512 SMART mt_12 384 415 IPR003690 GO:0003690|GO:0006355
Pral4972g00003 512 MobiDBLite consensus disorder prediction 493 512 - -
Pral4972g00003 512 Pfam mTERF 154 462 IPR003690 GO:0003690|GO:0006355
Pral4972g00003 512 PANTHER CGI-12 PROTEIN-RELATED 164 466 IPR003690 GO:0003690|GO:0006355
Pral4972g00003 512 Gene3D Transcription termination factor 3, mitochondrial 259 472 IPR038538 -
Pral4972g00003 512 Gene3D Transcription termination factor 3, mitochondrial 118 258 IPR038538 -
Pral4972g00003 512 FunFam Transcription termination factor MTERF4, chloroplastic 256 470 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4972g00003 Pral-Chr4972 14011 15775 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Pral4972g00003 mTERF 1.7e-104 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4972g00003 K15031 - qsa:O6P43_029347 852.818