Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4963g00033 ATGAAAAGAGAGGACGATTATGGGCAGTGTTCTTCACAAGCAATAAACAACTTCCACAGTTATCAAGAGCAATTACTTCTGCAACAGATGCAGCAACAGAACAGTATGTTTCCGGAGGTTTCTCCGATCCTACAGTCGCCGTGGAACATCCCGCCGGTTCATTCCTTCAACCAGGTGGCTCATCATCATCATCATCACTTTTCGAATCCGGTTCGAGTCGAGCATGACCCGTTTCTTCTTCCTCCCCCACCTCCTCCCCCAGCTGGACCCTATGCTAGTTTATTTAACAGGAGGGTTCCTTCTCTGCAGTTTGCGTACGACGGTTCACCTTCCGACCATCTCCGGATCTTATCTGAGGCTCTTGGACCCATGGTTCAGCCCGGTTCTGCTCCATTCGGTCTCCAAGCCGAATTGGGCAAGATGACTGCTCAAGAAATTATGGACGCTAAGGCCCTCGCGGCGTCCAAGAGTCACAGTGAAGCTGAAAGGAGACGCCGAGAGAGAATCAATAACCATCTCGCCAAGCTTCGCAGCTTATTGCCCAGTACGACCAAAACGGATAAAGCATCATTGCTGGCAGAAGTGATTCAGCATGTGAAGGAACTGAAGCGGCAGACGTCGTTAATAGCAGAAACAAGCCCGGTGCCGACGGAGGTCGACGAGCTGACGGTGGACGCCGCCGACGAGGACGACGACGGGAAGGTCGTGATCAAAGCCTCCTTCTGCTGCGAGGACAGGTCAGATCTCTTGCCGGAACTCATCAAGACACTGAAAGCACTAAAGCTGAGAACCCTGAAAGCAGAAATCACCACACTTGGTGGACGCGTGAAGAATGTGTTGTTCATCACCGGGGAAGACGACGGCGATTCACAGAGCAGCGGCGAGCTTCATCATCAGAACCAGATGATGCAGCAACAACAATATTGTATAAACTCGATACAAGAAGCTCTTAGGGCTGTGATGGAGAAGAGTGGCGGTGGAGATGACACAGCAAGTGGGGCTGTTAAGAGACAAAGGACTAATAACCTTAATATCCTCGAACACAGGTCTTTATAA 1056 0.5066 MKREDDYGQCSSQAINNFHSYQEQLLLQQMQQQNSMFPEVSPILQSPWNIPPVHSFNQVAHHHHHHFSNPVRVEHDPFLLPPPPPPPAGPYASLFNRRVPSLQFAYDGSPSDHLRILSEALGPMVQPGSAPFGLQAELGKMTAQEIMDAKALAASKSHSEAERRRRERINNHLAKLRSLLPSTTKTDKASLLAEVIQHVKELKRQTSLIAETSPVPTEVDELTVDAADEDDDGKVVIKASFCCEDRSDLLPELIKTLKALKLRTLKAEITTLGGRVKNVLFITGEDDGDSQSSGELHHQNQMMQQQQYCINSIQEALRAVMEKSGGGDDTASGAVKRQRTNNLNILEHRSL 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4963g00033 351 SMART finulus 159 208 IPR011598 GO:0046983
Pral4963g00033 351 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 157 209 IPR036638 GO:0046983
Pral4963g00033 351 PANTHER TRANSCRIPTION FACTOR BHLH30 33 344 IPR045847 GO:0003700|GO:0006355
Pral4963g00033 351 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 153 202 IPR011598 GO:0046983
Pral4963g00033 351 CDD bHLH_AtAIG1_like 148 226 - -
Pral4963g00033 351 Gene3D - 148 209 IPR036638 GO:0046983
Pral4963g00033 351 FunFam transcription factor bHLH30 148 211 - -
Pral4963g00033 351 Pfam Helix-loop-helix DNA-binding domain 156 202 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4963g00033 Pral-Chr4963 301188 303820 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4963g00033 11 349 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 53.351 4.68e-107 316
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pral4963g00033 HLH 1.7e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4963g00033 - - cave:132184452 429.098