Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4963g00032 ATGAAAAGAGAGGACGATTATGGGCAGTGTTCTTCACAAGCAATAAACAACTTCCACAGTTATCAAGAGCAATTACTTCTGCAACAGATGCAGCAACAGAACAGTATGTTTCCGGAGGTTTCTCCGATCCTACAGTCGCCGTGGAACATCCCGCCGGTTCATTCCTTCAACCAGGTGGCTCATCATCATCATCATCACTTTTCGAATCCGTTTGCGTACGACGGTTCACCTTCCGACCATCTCCGGATCTTATCTGAGGCTCTTGGACCCATGGTTCAGCCCGGTTCTGCTCCATTCGGTCTCCAAGCCGAATTGGGCAAGATGACTGCTCAAGAAATTATGGACGCTAAGGCCCTCGCGGCGTCCAAGAGTCACAGTGAAGCTGAAAGGAGACGCCGAGAGAGAATCAATAACCATCTCGCCAAGCTTCGCAGCTTATTGCCCAGTACGACCAAAACGGATAAAGCATCATTGCTGGCAGAAGTGATTCAGCATGTGAAGGAACTGAAGCGGCAGACGTCGTTAATAGCAGAAACAAGCCCGGTGCCGACGGAGGTCGACGAGCTGACGGTGGACGCCGCCGACGAGGACGACGACGGGAAGGTCGTGATCAAAGCCTCCTTCTGCTGCGAGGACAGGTCAGATCTCTTGCCGGAACTCATCAAGACACTGAAAGCACTAAAGCTGAGAACCCTGAAAGCAGAAATCACCACACTTGGTGGACGCGTGAAGAATGTGTTGTTCATCACCGGGGAAGACGACGGCGATTCACAGAGCAGCGGCGAGCTTCATCATCAGAACCAGATGATGCAGCAACAACAATATTGTATAAACTCGATACAAGAAGCTCTTAGGGCTGTGATGGAGAAGAGTGGCGGTGGAGATGACACAGCAAGTGGGGCTGTTAAGAGACAAAGGACTAATAACCTTAATATCCTCGAACACAGGTCTTTATAA 957 0.5026 MKREDDYGQCSSQAINNFHSYQEQLLLQQMQQQNSMFPEVSPILQSPWNIPPVHSFNQVAHHHHHHFSNPFAYDGSPSDHLRILSEALGPMVQPGSAPFGLQAELGKMTAQEIMDAKALAASKSHSEAERRRRERINNHLAKLRSLLPSTTKTDKASLLAEVIQHVKELKRQTSLIAETSPVPTEVDELTVDAADEDDDGKVVIKASFCCEDRSDLLPELIKTLKALKLRTLKAEITTLGGRVKNVLFITGEDDGDSQSSGELHHQNQMMQQQQYCINSIQEALRAVMEKSGGGDDTASGAVKRQRTNNLNILEHRSL 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4963g00032 318 CDD bHLH_AtAIG1_like 115 193 - -
Pral4963g00032 318 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 124 176 IPR036638 GO:0046983
Pral4963g00032 318 SMART finulus 126 175 IPR011598 GO:0046983
Pral4963g00032 318 PANTHER TRANSCRIPTION FACTOR BHLH30 20 311 IPR045847 GO:0003700|GO:0006355
Pral4963g00032 318 Gene3D - 115 176 IPR036638 GO:0046983
Pral4963g00032 318 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 120 169 IPR011598 GO:0046983
Pral4963g00032 318 FunFam transcription factor bHLH30 115 178 - -
Pral4963g00032 318 Pfam Helix-loop-helix DNA-binding domain 123 169 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4963g00032 Pral-Chr4963 301188 303820 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4963g00032 11 316 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 52.861 4.33e-105 310
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pral4963g00032 HLH 1.5e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4963g00032 - - jre:108993280 390.963