Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4963g00024 ATGGATGCAAGTAGTTGCGTAGATGAAGGCACAACGAGTGATTCGGTGTCCATATCGCTTTCTCCGGCCATGACTACTGTATCGCCGCTCAACGTCACGCCTCACAAGTCATCGCCAAATAGTCTCTGCCGGGTTGGCAGCGGCGCCAGCACTGTTTTGGACTCCGATGGCAGCGTTATTGAGGCTGAGTCTAGGAAACTGCCGTCGTCCAGATACAAGGGAGTGGTGCCGCAACCCAATGGACGATGGGGGGCCCAGATATACGAGAAGCACCAGCGCGTTTGGCTTGGTACGTTCAACGAGGAAGATGAGGCCGCCAGAGCCTACGACATCGCTGCCCAGAGGTTCCGCGGCAAGGACGCCGTCACCAACTTCAAGCCCCTCAACGGCAACAGCTCCGACGATGCGTCGGACGACGATATCGAGACGGCCTTCCTCAACTCGCATTCCAAAGCCGAGATCGTGGACATGCTGAGGAAGCACACCTACAATGACGAACTCGAGCAGAGCAAGCGCAACCGAGGTTTGGCCGGGGGAAGCAACGGGAAGTCGCGGAAGGACGGCGGCGCAGGGTCGTGCTTCGAGCGGACGCAGAAAGCGCGTGAGCAGCTGTTCGAGAAAACCGTCACGCCGAGCGACGTGGGAAAGCTGAATCGATTGGTGATACCCAAGCAGCACGCGGAGAAGAACTTCCCGTTGCAGACCGGAGTCGCTTCTTGCCCGGTTTCGGCAGCGGCGGCGAAGGGGGTGCTTTTGAATTTCGAGGACGATGCAGGGAAAGTGTGGAGGTTTCGGTACTCGTACTGGAATAGTAGCCAGAGCTACGTGCTGACGAAAGGATGGAGCAGGTTCGTGAAGGAGAAGAACCTGAAAGCCGGCGATACGGTCAGTTTCCACAGGTCGACCGGACCGGACCGGCAGCTCTACATTGACTGGAAAGCCCGGAATAACCAGAGTGTCGTCGGTGGTGCAGGGACCGGAATGGAGGGGCTGTACAACCCGGCAGGGCCGGTGGTGCAGCCGGTTCAGATGGTTCGGCTCTTCGGTGTGAACATTTTGAAAATGCCGCCGGCGGAATCTGTAGGTGGGAGCTGCCACGGCAAGAGGAAAGAGGTGGAGCTGTTAACGTTAGAGTTTAGCAAGAAGCCAAAGATAATCGGAGCTTTGTAG 1170 0.5761 MDASSCVDEGTTSDSVSISLSPAMTTVSPLNVTPHKSSPNSLCRVGSGASTVLDSDGSVIEAESRKLPSSRYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEDEAARAYDIAAQRFRGKDAVTNFKPLNGNSSDDASDDDIETAFLNSHSKAEIVDMLRKHTYNDELEQSKRNRGLAGGSNGKSRKDGGAGSCFERTQKAREQLFEKTVTPSDVGKLNRLVIPKQHAEKNFPLQTGVASCPVSAAAAKGVLLNFEDDAGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDTVSFHRSTGPDRQLYIDWKARNNQSVVGGAGTGMEGLYNPAGPVVQPVQMVRLFGVNILKMPPAESVGGSCHGKRKEVELLTLEFSKKPKIIGAL 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4963g00024 389 FunFam AP2 domain-containing protein RAP2.8 70 127 - -
Pral4963g00024 389 Pfam B3 DNA binding domain 205 313 IPR003340 GO:0003677
Pral4963g00024 389 Gene3D AP2/ERF domain 70 127 IPR036955 GO:0003700|GO:0006355
Pral4963g00024 389 ProSiteProfiles B3 DNA-binding domain profile. 205 316 IPR003340 GO:0003677
Pral4963g00024 389 SMART rav1_2 71 132 IPR001471 GO:0003700|GO:0006355
Pral4963g00024 389 ProSiteProfiles AP2/ERF domain profile. 71 126 IPR001471 GO:0003700|GO:0006355
Pral4963g00024 389 SUPERFAMILY DNA-binding domain 70 126 IPR016177 GO:0003677
Pral4963g00024 389 Pfam AP2 domain 70 118 IPR001471 GO:0003700|GO:0006355
Pral4963g00024 389 MobiDBLite consensus disorder prediction 165 192 - -
Pral4963g00024 389 SMART B3_2 205 316 IPR003340 GO:0003677
Pral4963g00024 389 SUPERFAMILY DNA-binding pseudobarrel domain 203 310 IPR015300 -
Pral4963g00024 389 Gene3D - 193 324 IPR015300 -
Pral4963g00024 389 CDD B3_DNA 204 301 IPR003340 GO:0003677
Pral4963g00024 389 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 66 361 IPR044800 GO:0003700
Pral4963g00024 389 CDD AP2 70 125 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4963g00024 Pral-Chr4963 181561 183032 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4963g00024 5 389 B3 DNA Binding Superfamily AT1G25560 57.722 4.89e-140 401
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-RAV Pral4963g00024 B3 3.5e-28 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4963g00024 K09287 - gmx:100801107 521.546