Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4963g00023 ATGACTACTGTATCGCCGCTCAACGTCACGCCTCACAAGTCATCGCCAAATAGTCTCTGCCGGGTTGGCAGCGGCGCCAGCACTGTTTTGGACTCCGATGGCAGCGTTATTGAGGCTGAGTCTAGGAAACTGCCGTCGTCCAGATACAAGGGAGTGGTGCCGCAACCCAATGGACGATGGGGGGCCCAGATATACGAGAAGCACCAGCGCGTTTGGCTTGGTACGTTCAACGAGGAAGATGAGGCCGCCAGAGCCTACGACATCGCTGCCCAGAGGTTCCGCGGCAAGGACGCCGTCACCAACTTCAAGCCCCTCAACGGCAACAGCTCCGACGATGCGTCGGACGACGATATCGAGACGGCCTTCCTCAACTCGCATTCCAAAGCCGAGATCGTGGACATGCTGAGGAAGCACACCTACAATGACGAACTCGAGCAGAGCAAGCGCAACCGAGGTTTGGCCGGGGGAAGCAACGGGAAGTCGCGGAAGGACGGCGGCGCAGGGTCGTGCTTCGAGCGGACGCAGAAAGCGCGTGAGCAGCTGTTCGAGAAAACCGTCACGCCGAGCGACGTGGGAAAGCTGAATCGATTGGTGATACCCAAGCAGCACGCGGAGAAGAACTTCCCGTTGCAGACCGGAGTCGCTTCTTGCCCGGTTTCGGCAGCGGCGGCGAAGGGGGTGCTTTTGAATTTCGAGGACGATGCAGGGAAAGTGTGGAGGTTTCGGTACTCGTACTGGAATAGTAGCCAGAGCTACGTGCTGACGAAAGGATGGAGCAGGTTCGTGAAGGAGAAGAACCTGAAAGCCGGCGATACGGTCAGTTTCCACAGGTCGACCGGACCGGACCGGCAGCTCTACATTGACTGGAAAGCCCGGAATAACCAGAGTGTCGTCGGTGGTGCAGGGACCGGAATGGAGGGGCTGTACAACCCGGCAGGGCCGGTGGTGCAGCCGGTTCAGATGGTTCGGCTCTTCGGTGTGAACATTTTGAAAATGCCGCCGGCGGAATCTGTAGGTGGGAGCTGCCACGGCAAGAGGAAAGAGGTGGAGCTGTTAACGTTAGAGTTTAGCAAGAAGCCAAAGATAATCGGAGCTTTGTAG 1101 0.5804 MTTVSPLNVTPHKSSPNSLCRVGSGASTVLDSDGSVIEAESRKLPSSRYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEDEAARAYDIAAQRFRGKDAVTNFKPLNGNSSDDASDDDIETAFLNSHSKAEIVDMLRKHTYNDELEQSKRNRGLAGGSNGKSRKDGGAGSCFERTQKAREQLFEKTVTPSDVGKLNRLVIPKQHAEKNFPLQTGVASCPVSAAAAKGVLLNFEDDAGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDTVSFHRSTGPDRQLYIDWKARNNQSVVGGAGTGMEGLYNPAGPVVQPVQMVRLFGVNILKMPPAESVGGSCHGKRKEVELLTLEFSKKPKIIGAL 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4963g00023 366 SMART rav1_2 48 109 IPR001471 GO:0003700|GO:0006355
Pral4963g00023 366 FunFam AP2 domain-containing protein RAP2.8 47 104 - -
Pral4963g00023 366 MobiDBLite consensus disorder prediction 1 20 - -
Pral4963g00023 366 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 43 338 IPR044800 GO:0003700
Pral4963g00023 366 MobiDBLite consensus disorder prediction 142 169 - -
Pral4963g00023 366 ProSiteProfiles AP2/ERF domain profile. 48 103 IPR001471 GO:0003700|GO:0006355
Pral4963g00023 366 SMART B3_2 182 293 IPR003340 GO:0003677
Pral4963g00023 366 CDD AP2 47 102 IPR001471 GO:0003700|GO:0006355
Pral4963g00023 366 SUPERFAMILY DNA-binding pseudobarrel domain 180 287 IPR015300 -
Pral4963g00023 366 CDD B3_DNA 181 278 IPR003340 GO:0003677
Pral4963g00023 366 Pfam AP2 domain 47 95 IPR001471 GO:0003700|GO:0006355
Pral4963g00023 366 Pfam B3 DNA binding domain 182 290 IPR003340 GO:0003677
Pral4963g00023 366 SUPERFAMILY DNA-binding domain 47 103 IPR016177 GO:0003677
Pral4963g00023 366 ProSiteProfiles B3 DNA-binding domain profile. 182 293 IPR003340 GO:0003677
Pral4963g00023 366 Gene3D - 170 301 IPR015300 -
Pral4963g00023 366 Gene3D AP2/ERF domain 47 104 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4963g00023 Pral-Chr4963 170929 183032 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4963g00023 9 365 RAV Transcription Factor Family AT1G13260 60.274 3.31e-136 390
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-RAV Pral4963g00023 B3 3.1e-28 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4963g00023 K09287 - gmx:100801107 498.049