Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4963g00018 ATGCGGCCCCACTTGATGATGGGGTTCTCCGATTACATTCAAGCATTAGAATCTGAACGCCGTAAAATCCATGTCTTCTCCAAGGAGCTTCCTCTTTCCTTGGAGCTCGTTACCCAAGCCATTGAAGCCTGTAGGCTCCAGTTAAGTGGAAGAACGTCGTCGGGGCCGAATTTGAATAATTTGAATGGCCAATCGGAGTGTTCAAGACAGACATCATCGGAAGGACTTGTTTTGGAGGAGTTCATACCTATAAAGAAAAGGACATCCTCGGATTGTGGGGAAGACGATGAAGATGAGCAAAACTCGCTTGAACGCAAGATTGCACAGGATAATAAGAACGCTGATAAGAGCAAATCGGATTGGCTTAGATCCGTACAACTCTGGAATCCACAATCCCCAGTTAAAGAGGATATTCCTCGGAAAACGTCGGTGTTGGAAGTAAAGAAAGATGGAGGTGCTTTCGAGCCATTCCACAGAGAACCAAGTGTTGGAAATACTACTTCGTTAACGGCCAAAGCATGCTCGTCGTCGGCGCCGGCGCCGGCGCCGGCACCTCCAGTCGCCGGAAGCAAAAAGAAAGAAGATAAAGAAGCACATAATAAAAGGAAGCAACGGCGGTGCTGGTCTCAGGAGCTGCACAGGCGCTTCGTGAACGTCCTTCAGCAACTTGGTGGAGCGGATTCTGCAACACCGAAGCAGATAAGGGAACTTATGAAGGTTGATGGCCTAACAAATGATGAAGTGAAGAGTCATTTACAGAAATTTCGATTGCACACGAGGAGGTCAAGCCCATTGATTCAGAACAATGGCGATTCACAAGCGGCTCCATTTGTACTGGTGGGGAACTTTATAGTGCAACCGCCGGAACATGCAGCGGCGGTGGCTACTTTGAAGGCGTCAGAGAAAATGCCGACGCTGGGGGCGCCGCTGCCTCGGATTTATGCGCCGGTTCCGATGAAGGGTGATGGAAGGCAACTGGATTTGGGAAATAATTGTTGTGGACGCGTACGTTCAAATTCAGAAGGCAGCGAAGTGGCGGATCATTCAAATTCACCAACTTCGTCTTCCTCCACACACATTTGA 1083 0.4894 MRPHLMMGFSDYIQALESERRKIHVFSKELPLSLELVTQAIEACRLQLSGRTSSGPNLNNLNGQSECSRQTSSEGLVLEEFIPIKKRTSSDCGEDDEDEQNSLERKIAQDNKNADKSKSDWLRSVQLWNPQSPVKEDIPRKTSVLEVKKDGGAFEPFHREPSVGNTTSLTAKACSSSAPAPAPAPPVAGSKKKEDKEAHNKRKQRRCWSQELHRRFVNVLQQLGGADSATPKQIRELMKVDGLTNDEVKSHLQKFRLHTRRSSPLIQNNGDSQAAPFVLVGNFIVQPPEHAAAVATLKASEKMPTLGAPLPRIYAPVPMKGDGRQLDLGNNCCGRVRSNSEGSEVADHSNSPTSSSSTHI 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4963g00018 360 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 200 260 IPR017930 -
Pral4963g00018 360 NCBIfam myb-like DNA-binding domain, SHAQKYF class 203 258 IPR006447 GO:0003677
Pral4963g00018 360 SUPERFAMILY Homeodomain-like 201 261 IPR009057 -
Pral4963g00018 360 MobiDBLite consensus disorder prediction 161 175 - -
Pral4963g00018 360 MobiDBLite consensus disorder prediction 189 205 - -
Pral4963g00018 360 MobiDBLite consensus disorder prediction 152 207 - -
Pral4963g00018 360 MobiDBLite consensus disorder prediction 88 118 - -
Pral4963g00018 360 Gene3D - 202 260 - -
Pral4963g00018 360 MobiDBLite consensus disorder prediction 332 360 - -
Pral4963g00018 360 MobiDBLite consensus disorder prediction 326 360 - -
Pral4963g00018 360 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 9 315 IPR044787 GO:0003700|GO:0006355
Pral4963g00018 360 MobiDBLite consensus disorder prediction 52 73 - -
Pral4963g00018 360 FunFam Myb family transcription factor 202 260 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4963g00018 Pral-Chr4963 151590 153138 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4963g00018 11 253 G2-like Transcription Factor Family AT1G25550 53.226 7.34e-76 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Pral4963g00018 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4963g00018 - - qsa:O6P43_032783 356.295