Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4963g00004 ATGAAGATATTCGTTAAGACTCTCAAAGGCACCAACTTCGAAATCGATGTCAAGCCTGAGAATACGGTTGCTGAAGTGAAGAAACATATAGAAACTGTCCAGGGTGCAGCTGTCTATCCTGCTGCACAGCAAATGCTTATTCATCAAGGGAAAGTTCTCAAAGATGGTACTACCTTGGAGGAAAATGAAGTAGTTGAAAACAGTTTTGTTGTAATCATGCTATCAAAGGCTCCTCAGACCAGTTCAGCTGCTACGCCAGCCCCTGCGTCAACAGCACCTCAAGCTCCTGCTACAGCTGGGGCACCGCCTGCATCTATTACTGCACCTGCACCTGCACCTGCACCTGCTCCTTCACCTTCACCAGCTCCAGCTCCTGCTGTGTCAGGGTCTGATATCTATGGGCAGGCAGCGTCTAATCTTGTTGCTGGGACCAACTTGGAGGGAACAATCCAGCAAATTCTTGATATGGGTGGAGGGAGCTGGGATAGGGATACTGTTGTCCGAGCTCTTCGTGCTGCTTATAACAACCCTGAGAGAGCTGTGGAATACTTGTATTCGGGTATCCCCGAGCAAGCTGAAGCTGCCCCTGTGGCTCGTGCGCCTGCAAGTGGTGCCCAAGCTGGAGATGCTCCCTCCGCAGCTCCACAAGCTGCACAAGCTGCACAACCTGCACAGCCTGCACCTGTTCCTTCAAGTGGACCTAATGCCAATCCTTTGGATCTCTTTCCTCAGGGTCTCCCAAATGTTGGTGCTGGTGCTGCTGGTGCTGGCAATCTTGATTTTCTGCGCAACAGTCAACAGTTCCAAGCGTTGCGAGCCATGGTGCAGGCCAATCCACAAATATTGCAGCCTATGCTTCAAGAGCTTGGGAAACAAAATCCTCATCTAATGAGGTTGATTCAAGAGCATCAAGCTGACTTCCTTCGCCTGATAAATGAACCTGTGGAAGGTGGTGAGGGGAATATATTGGGGCAGCTGGCTAATGCCATGCCGCAAACAATAGCTGTCACCCCTGAGGAGCGCCAAGCAATTGAACGTCTTGAAGCAATGGGATTTGATCGAGCACTTGTTTTGGAGGTGTACTTTGCTTGTAACAAAAATGAAGAATTGGCTGCTAACTACCTCTTAGATCACATGCACGAGTTTGAGGAATGA 1155 0.4961 MKIFVKTLKGTNFEIDVKPENTVAEVKKHIETVQGAAVYPAAQQMLIHQGKVLKDGTTLEENEVVENSFVVIMLSKAPQTSSAATPAPASTAPQAPATAGAPPASITAPAPAPAPAPSPSPAPAPAVSGSDIYGQAASNLVAGTNLEGTIQQILDMGGGSWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEAAPVARAPASGAQAGDAPSAAPQAAQAAQPAQPAPVPSSGPNANPLDLFPQGLPNVGAGAAGAGNLDFLRNSQQFQALRAMVQANPQILQPMLQELGKQNPHLMRLIQEHQADFLRLINEPVEGGEGNILGQLANAMPQTIAVTPEERQAIERLEAMGFDRALVLEVYFACNKNEELAANYLLDHMHEFEE 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4963g00004 384 Gene3D - 1 77 - -
Pral4963g00004 384 SMART ubq_7 1 75 IPR000626 GO:0005515
Pral4963g00004 384 NCBIfam UV excision repair protein Rad23 1 383 IPR004806 GO:0006289
Pral4963g00004 384 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 337 378 IPR015940 -
Pral4963g00004 384 SUPERFAMILY XPC-binding domain 255 321 IPR036353 GO:0003684|GO:0006289|GO:0043161
Pral4963g00004 384 Gene3D - 332 379 - -
Pral4963g00004 384 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 143 187 IPR015940 -
Pral4963g00004 384 Pfam Ubiquitin family 3 76 IPR000626 GO:0005515
Pral4963g00004 384 FunFam UV excision repair protein RAD23 1 80 - -
Pral4963g00004 384 Gene3D - 250 315 IPR036353 GO:0003684|GO:0006289|GO:0043161
Pral4963g00004 384 Pfam UBA/TS-N domain 149 184 IPR015940 -
Pral4963g00004 384 Pfam UBA/TS-N domain 340 375 IPR015940 -
Pral4963g00004 384 FunFam UV excision repair protein RAD23 B 250 315 - -
Pral4963g00004 384 SUPERFAMILY Ubiquitin-like 1 90 IPR029071 -
Pral4963g00004 384 SUPERFAMILY UBA-like 321 382 IPR009060 GO:0005515
Pral4963g00004 384 FunFam UV excision repair protein RAD23 homolog 139 189 - -
Pral4963g00004 384 CDD Ubl_Rad23 1 74 - -
Pral4963g00004 384 ProSiteProfiles Ubiquitin domain profile. 1 76 IPR000626 GO:0005515
Pral4963g00004 384 PANTHER UV EXCISION REPAIR PROTEIN RAD23 1 373 - -
Pral4963g00004 384 SUPERFAMILY UBA-like 144 197 IPR009060 GO:0005515
Pral4963g00004 384 CDD UBA1_Rad23_plant 140 189 - -
Pral4963g00004 384 Gene3D - 139 189 - -
Pral4963g00004 384 MobiDBLite consensus disorder prediction 81 127 - -
Pral4963g00004 384 SMART uba_6 340 377 IPR015940 -
Pral4963g00004 384 SMART uba_6 146 186 IPR015940 -
Pral4963g00004 384 Pfam XPC-binding domain 259 314 IPR015360 GO:0003684|GO:0006289|GO:0043161
Pral4963g00004 384 SMART CBM 257 300 IPR006636 -
Pral4963g00004 384 MobiDBLite consensus disorder prediction 106 124 - -
Pral4963g00004 384 MobiDBLite consensus disorder prediction 196 244 - -
Pral4963g00004 384 FunFam UV excision repair protein RAD23 homolog 331 379 - -
Pral4963g00004 384 PRINTS DNA repair protein Rad23 signature 285 307 IPR004806 GO:0006289
Pral4963g00004 384 PRINTS DNA repair protein Rad23 signature 351 365 IPR004806 GO:0006289
Pral4963g00004 384 PRINTS DNA repair protein Rad23 signature 366 381 IPR004806 GO:0006289
Pral4963g00004 384 PRINTS DNA repair protein Rad23 signature 334 350 IPR004806 GO:0006289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4963g00004 Pral-Chr4963 25551 31824 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4963g00004 1 74 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 37.838 4.60e-07 47.0