Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4963g00003 ATGAAGATATTCGTTAAGACTCTCAAAGGCACCAACTTCGAAATCGATGTCAAGCCTGAGAATACGGTTGCTGAAGTGAAGAAACATATAGAAACTGTCCAGGGTGCAGCTGTCTATCCTGCTGCACAGCAAATGCTTATTCATCAAGGGAAAGTTCTCAAAGATGGTACTACCTTGGAGGAAAATGAAGTAGTTGAAAACAGTTTTGTTGTAATCATGCTATCAAAGAGTAAGAGCTCATCAGGTGAGGGATCTACTACTTCACCTTCAGTTAAGGCTCCTCAGACCAGTTCAGCTGCTACGCCAGCCCCTGCGTCAACAGCACCTCAAGCTCCTGCTACAGCTGGGGCACCGCCTGCATCTATTACTGCACCTGCACCTGCACCTGCACCTGCTCCTTCACCTTCACCAGCTCCAGCTCCTGCTGTGTCAGGGTCTGATATCTATGGGCAGGCAGCGTCTAATCTTGTTGCTGGGACCAACTTGGAGGGAACAATCCAGCAAATTCTTGATATGGGTGGAGGGAGCTGGGATAGGGATACTGTTGTCCGAGCTCTTCGTGCTGCTTATAACAACCCTGAGAGAGCTGTGGAATACTTGTATTCGGGTATCCCCGAGCAAGCTGAAGCTGCCCCTGTGGCTCGTGCGCCTGCAAGTGGTGCCCAAGCTGGAGATGCTCCCTCCGCAGCTCCACAAGCTGCACAAGCTGCACAACCTGCACAGCCTGCACCTGTTCCTTCAAGTGGACCTAATGCCAATCCTTTGGATCTCTTTCCTCAGGGTCTCCCAAATGTTGGTGCTGGTGCTGCTGGTGCTGGCAATCTTGATTTTCTGCGCAACAGTCAACAGTTCCAAGCGTTGCGAGCCATGGTGCAGGCCAATCCACAAATATTGCAGCCTATGCTTCAAGAGCTTGGGAAACAAAATCCTCATCTAATGAGGTTGATTCAAGAGCATCAAGCTGACTTCCTTCGCCTGATAAATGAACCTGTGGAAGGTGGTGAGGGGAATATATTGGGGCAGCTGGCTAATGCCATGCCGCAAACAATAGCTGTCACCCCTGAGGAGCGCCAAGCAATTGAACGTCTTGAAGCAATGGGATTTGATCGAGCACTTGTTTTGGAGGTGTACTTTGCTTGTAACAAAAATGAAGAATTGGCTGCTAACTACCTCTTAGATCACATGCACGAGTTTGAGGAATGA 1203 0.4938 MKIFVKTLKGTNFEIDVKPENTVAEVKKHIETVQGAAVYPAAQQMLIHQGKVLKDGTTLEENEVVENSFVVIMLSKSKSSSGEGSTTSPSVKAPQTSSAATPAPASTAPQAPATAGAPPASITAPAPAPAPAPSPSPAPAPAVSGSDIYGQAASNLVAGTNLEGTIQQILDMGGGSWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEAAPVARAPASGAQAGDAPSAAPQAAQAAQPAQPAPVPSSGPNANPLDLFPQGLPNVGAGAAGAGNLDFLRNSQQFQALRAMVQANPQILQPMLQELGKQNPHLMRLIQEHQADFLRLINEPVEGGEGNILGQLANAMPQTIAVTPEERQAIERLEAMGFDRALVLEVYFACNKNEELAANYLLDHMHEFEE 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4963g00003 400 Pfam UBA/TS-N domain 165 200 IPR015940 -
Pral4963g00003 400 Pfam UBA/TS-N domain 356 391 IPR015940 -
Pral4963g00003 400 MobiDBLite consensus disorder prediction 77 108 - -
Pral4963g00003 400 SMART ubq_7 1 75 IPR000626 GO:0005515
Pral4963g00003 400 SUPERFAMILY UBA-like 160 213 IPR009060 GO:0005515
Pral4963g00003 400 Gene3D - 266 331 IPR036353 GO:0003684|GO:0006289|GO:0043161
Pral4963g00003 400 SUPERFAMILY UBA-like 337 398 IPR009060 GO:0005515
Pral4963g00003 400 PANTHER UV EXCISION REPAIR PROTEIN RAD23 1 389 - -
Pral4963g00003 400 Gene3D - 1 80 - -
Pral4963g00003 400 Pfam XPC-binding domain 275 330 IPR015360 GO:0003684|GO:0006289|GO:0043161
Pral4963g00003 400 PRINTS DNA repair protein Rad23 signature 350 366 IPR004806 GO:0006289
Pral4963g00003 400 PRINTS DNA repair protein Rad23 signature 382 397 IPR004806 GO:0006289
Pral4963g00003 400 PRINTS DNA repair protein Rad23 signature 367 381 IPR004806 GO:0006289
Pral4963g00003 400 PRINTS DNA repair protein Rad23 signature 301 323 IPR004806 GO:0006289
Pral4963g00003 400 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 159 203 IPR015940 -
Pral4963g00003 400 ProSiteProfiles Ubiquitin domain profile. 1 79 IPR000626 GO:0005515
Pral4963g00003 400 SMART CBM 273 316 IPR006636 -
Pral4963g00003 400 CDD Ubl_Rad23 1 74 - -
Pral4963g00003 400 Pfam Ubiquitin family 3 76 IPR000626 GO:0005515
Pral4963g00003 400 SMART uba_6 356 393 IPR015940 -
Pral4963g00003 400 SMART uba_6 162 202 IPR015940 -
Pral4963g00003 400 FunFam UV excision repair protein RAD23 1 80 - -
Pral4963g00003 400 CDD UBA1_Rad23_plant 156 205 - -
Pral4963g00003 400 Gene3D - 155 205 - -
Pral4963g00003 400 FunFam UV excision repair protein RAD23 homolog 155 205 - -
Pral4963g00003 400 SUPERFAMILY Ubiquitin-like 1 80 IPR029071 -
Pral4963g00003 400 FunFam UV excision repair protein RAD23 B 266 331 - -
Pral4963g00003 400 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 353 394 IPR015940 -
Pral4963g00003 400 SUPERFAMILY XPC-binding domain 271 337 IPR036353 GO:0003684|GO:0006289|GO:0043161
Pral4963g00003 400 NCBIfam UV excision repair protein Rad23 1 399 IPR004806 GO:0006289
Pral4963g00003 400 FunFam UV excision repair protein RAD23 homolog 347 395 - -
Pral4963g00003 400 MobiDBLite consensus disorder prediction 212 260 - -
Pral4963g00003 400 Gene3D - 348 395 - -
Pral4963g00003 400 MobiDBLite consensus disorder prediction 77 143 - -
Pral4963g00003 400 MobiDBLite consensus disorder prediction 122 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4963g00003 Pral-Chr4963 25551 31824 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4963g00003 1 74 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 37.838 4.37e-08 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4963g00003 K10839 - gmx:100813881 516.924