LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pral4963g00003	ATGAAGATATTCGTTAAGACTCTCAAAGGCACCAACTTCGAAATCGATGTCAAGCCTGAGAATACGGTTGCTGAAGTGAAGAAACATATAGAAACTGTCCAGGGTGCAGCTGTCTATCCTGCTGCACAGCAAATGCTTATTCATCAAGGGAAAGTTCTCAAAGATGGTACTACCTTGGAGGAAAATGAAGTAGTTGAAAACAGTTTTGTTGTAATCATGCTATCAAAGAGTAAGAGCTCATCAGGTGAGGGATCTACTACTTCACCTTCAGTTAAGGCTCCTCAGACCAGTTCAGCTGCTACGCCAGCCCCTGCGTCAACAGCACCTCAAGCTCCTGCTACAGCTGGGGCACCGCCTGCATCTATTACTGCACCTGCACCTGCACCTGCACCTGCTCCTTCACCTTCACCAGCTCCAGCTCCTGCTGTGTCAGGGTCTGATATCTATGGGCAGGCAGCGTCTAATCTTGTTGCTGGGACCAACTTGGAGGGAACAATCCAGCAAATTCTTGATATGGGTGGAGGGAGCTGGGATAGGGATACTGTTGTCCGAGCTCTTCGTGCTGCTTATAACAACCCTGAGAGAGCTGTGGAATACTTGTATTCGGGTATCCCCGAGCAAGCTGAAGCTGCCCCTGTGGCTCGTGCGCCTGCAAGTGGTGCCCAAGCTGGAGATGCTCCCTCCGCAGCTCCACAAGCTGCACAAGCTGCACAACCTGCACAGCCTGCACCTGTTCCTTCAAGTGGACCTAATGCCAATCCTTTGGATCTCTTTCCTCAGGGTCTCCCAAATGTTGGTGCTGGTGCTGCTGGTGCTGGCAATCTTGATTTTCTGCGCAACAGTCAACAGTTCCAAGCGTTGCGAGCCATGGTGCAGGCCAATCCACAAATATTGCAGCCTATGCTTCAAGAGCTTGGGAAACAAAATCCTCATCTAATGAGGTTGATTCAAGAGCATCAAGCTGACTTCCTTCGCCTGATAAATGAACCTGTGGAAGGTGGTGAGGGGAATATATTGGGGCAGCTGGCTAATGCCATGCCGCAAACAATAGCTGTCACCCCTGAGGAGCGCCAAGCAATTGAACGTCTTGAAGCAATGGGATTTGATCGAGCACTTGTTTTGGAGGTGTACTTTGCTTGTAACAAAAATGAAGAATTGGCTGCTAACTACCTCTTAGATCACATGCACGAGTTTGAGGAATGA	1203	0.4938	MKIFVKTLKGTNFEIDVKPENTVAEVKKHIETVQGAAVYPAAQQMLIHQGKVLKDGTTLEENEVVENSFVVIMLSKSKSSSGEGSTTSPSVKAPQTSSAATPAPASTAPQAPATAGAPPASITAPAPAPAPAPSPSPAPAPAVSGSDIYGQAASNLVAGTNLEGTIQQILDMGGGSWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEAAPVARAPASGAQAGDAPSAAPQAAQAAQPAQPAPVPSSGPNANPLDLFPQGLPNVGAGAAGAGNLDFLRNSQQFQALRAMVQANPQILQPMLQELGKQNPHLMRLIQEHQADFLRLINEPVEGGEGNILGQLANAMPQTIAVTPEERQAIERLEAMGFDRALVLEVYFACNKNEELAANYLLDHMHEFEE	400

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pral4963g00003	400	Pfam	UBA/TS-N domain	165	200	IPR015940	-
	Pral4963g00003	400	Pfam	UBA/TS-N domain	356	391	IPR015940	-
	Pral4963g00003	400	MobiDBLite	consensus disorder prediction	77	108	-	-
	Pral4963g00003	400	SMART	ubq_7	1	75	IPR000626	GO:0005515
	Pral4963g00003	400	SUPERFAMILY	UBA-like	160	213	IPR009060	GO:0005515
	Pral4963g00003	400	Gene3D	-	266	331	IPR036353	GO:0003684\|GO:0006289\|GO:0043161
	Pral4963g00003	400	SUPERFAMILY	UBA-like	337	398	IPR009060	GO:0005515
	Pral4963g00003	400	PANTHER	UV EXCISION REPAIR PROTEIN RAD23	1	389	-	-
	Pral4963g00003	400	Gene3D	-	1	80	-	-
	Pral4963g00003	400	Pfam	XPC-binding domain	275	330	IPR015360	GO:0003684\|GO:0006289\|GO:0043161

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Pral4963g00003	Pral-Chr4963	25551	31824	Tandem

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pral4963g00003	1	74	Cytoplasmic Ribosomal Protein Gene Family	AT3G52590	37.838	4.37e-08	50.1

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pral4963g00003	K10839		-	gmx:100813881	516.924

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