Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4963g00002 ATGAAGATATTCGTTAAGACTCTCAAAGGCACCAACTTCGAAATCGATGTCAAGCCTGAGAATACGGTTGCTGAAGTGAAGAAACATATAGAAACTGTCCAGGGTGCAGCTGTCTATCCTGCTGCACAGCAAATGCTTATTCATCAAGGGAAAGTTCTCAAAGATGGTACTACCTTGGAGGAAAATGAAGTAGTTGAAAACAGTTTTGTTGTAATCATGCTATCAAAGAGTAAGAGCTCATCAGGTGAGGGATCTACTACTTCACCTTCAGTTAAGGCTCCTCAGACCAGTTCAGCTGCTACGCCAGCCCCTGCGTCAACAGCACCTCAAGCTCCTGCTACAGCTGGGGCACCGCCTGCACCTGCACCTGCTCCTTCACCTTCACCAGCTCCAGCTCCTGCTGTGTCAGGGTCTGATATCTATGGGCAGGCAGCGTCTAATCTTGTTGCTGGGACCAACTTGGAGGGAACAATCCAGCAAATTCTTGATATGGGTGGAGGGAGCTGGGATAGGGATACTGTTGTCCGAGCTCTTCGTGCTGCTTATAACAACCCTGAGAGAGCTGTGGAATACTTGTATTCGGGTATCCCCGAGCAAGCTGAAGCTGCCCCTGTGGCTCGTGCGCCTGCAAGTGGTGCCCAAGCTGGAGATGCTCCCTCCGCAGCTCCACAAGCTGCACAAGCTGCACAACCTGCACAGCCTGCACCTGTTCCTTCAAGTGGACCTAATGCCAATCCTTTGGATCTCTTTCCTCAGGGTCTCCCAAATGTTGGTGCTGGTGCTGCTGGTGCTGGCAATCTTGATTTTCTGCGCAACAGTCAACAGTTCCAAGCGTTGCGAGCCATGGTGCAGGCCAATCCACAAATATTGCAGCCTATGCTTCAAGAGCTTGGGAAACAAAATCCTCATCTAATGAGGTTGATTCAAGAGCATCAAGCTGACTTCCTTCGCCTGATAAATGAACCTGTGGAAGGTGGTGAGGGGAATATATTGGGGCAGCTGGCTAATGCCATGCCGCAAACAATAGCTGTCACCCCTGAGGAGCGCCAAGCAATTGAACGTCTTGAAGCAATGGGATTTGATCGAGCACTTGTTTTGGAGGTGTACTTTGCTTGTAACAAAAATGAAGAATTGGCTGCTAACTACCTCTTAGATCACATGCACGAGTTTGAGGAATGA 1179 0.4936 MKIFVKTLKGTNFEIDVKPENTVAEVKKHIETVQGAAVYPAAQQMLIHQGKVLKDGTTLEENEVVENSFVVIMLSKSKSSSGEGSTTSPSVKAPQTSSAATPAPASTAPQAPATAGAPPAPAPAPSPSPAPAPAVSGSDIYGQAASNLVAGTNLEGTIQQILDMGGGSWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEAAPVARAPASGAQAGDAPSAAPQAAQAAQPAQPAPVPSSGPNANPLDLFPQGLPNVGAGAAGAGNLDFLRNSQQFQALRAMVQANPQILQPMLQELGKQNPHLMRLIQEHQADFLRLINEPVEGGEGNILGQLANAMPQTIAVTPEERQAIERLEAMGFDRALVLEVYFACNKNEELAANYLLDHMHEFEE 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4963g00002 392 MobiDBLite consensus disorder prediction 77 108 - -
Pral4963g00002 392 Gene3D - 147 197 - -
Pral4963g00002 392 Gene3D - 258 323 IPR036353 GO:0003684|GO:0006289|GO:0043161
Pral4963g00002 392 SMART ubq_7 1 75 IPR000626 GO:0005515
Pral4963g00002 392 PRINTS DNA repair protein Rad23 signature 374 389 IPR004806 GO:0006289
Pral4963g00002 392 PRINTS DNA repair protein Rad23 signature 359 373 IPR004806 GO:0006289
Pral4963g00002 392 PRINTS DNA repair protein Rad23 signature 342 358 IPR004806 GO:0006289
Pral4963g00002 392 PRINTS DNA repair protein Rad23 signature 293 315 IPR004806 GO:0006289
Pral4963g00002 392 Pfam UBA/TS-N domain 348 383 IPR015940 -
Pral4963g00002 392 Pfam UBA/TS-N domain 157 192 IPR015940 -
Pral4963g00002 392 MobiDBLite consensus disorder prediction 77 137 - -
Pral4963g00002 392 FunFam UV excision repair protein RAD23 homolog 147 197 - -
Pral4963g00002 392 SUPERFAMILY UBA-like 329 390 IPR009060 GO:0005515
Pral4963g00002 392 PANTHER UV EXCISION REPAIR PROTEIN RAD23 1 381 - -
Pral4963g00002 392 ProSiteProfiles Ubiquitin domain profile. 1 79 IPR000626 GO:0005515
Pral4963g00002 392 CDD Ubl_Rad23 1 74 - -
Pral4963g00002 392 SUPERFAMILY UBA-like 152 205 IPR009060 GO:0005515
Pral4963g00002 392 CDD UBA1_Rad23_plant 148 197 - -
Pral4963g00002 392 FunFam UV excision repair protein RAD23 homolog 339 387 - -
Pral4963g00002 392 NCBIfam UV excision repair protein Rad23 1 391 IPR004806 GO:0006289
Pral4963g00002 392 Gene3D - 340 387 - -
Pral4963g00002 392 Gene3D - 1 80 - -
Pral4963g00002 392 FunFam UV excision repair protein RAD23 B 258 323 - -
Pral4963g00002 392 SUPERFAMILY XPC-binding domain 263 329 IPR036353 GO:0003684|GO:0006289|GO:0043161
Pral4963g00002 392 Pfam XPC-binding domain 267 322 IPR015360 GO:0003684|GO:0006289|GO:0043161
Pral4963g00002 392 SMART uba_6 154 194 IPR015940 -
Pral4963g00002 392 SMART uba_6 348 385 IPR015940 -
Pral4963g00002 392 MobiDBLite consensus disorder prediction 204 252 - -
Pral4963g00002 392 Pfam Ubiquitin family 3 76 IPR000626 GO:0005515
Pral4963g00002 392 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 345 386 IPR015940 -
Pral4963g00002 392 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 151 195 IPR015940 -
Pral4963g00002 392 SMART CBM 265 308 IPR006636 -
Pral4963g00002 392 FunFam UV excision repair protein RAD23 1 80 - -
Pral4963g00002 392 MobiDBLite consensus disorder prediction 114 132 - -
Pral4963g00002 392 SUPERFAMILY Ubiquitin-like 1 80 IPR029071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4963g00002 Pral-Chr4963 25551 31824 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4963g00002 1 74 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 37.838 4.74e-08 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4963g00002 K10839 - gmx:100809066 522.316