Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4963g00001 ATGAAGATATTCGTTAAGACTCTCAAAGGCACCAACTTCGAAATCGATGTCAAGCCTGAGAATACGGTTGCTGAAGTGAAGAAACATATAGAAACTGTCCAGGGTGCAGCTGTCTATCCTGCTGCACAGCAAATGCTTATTCATCAAGGGAAAGTTCTCAAAGATGGTACTACCTTGGAGGAAAATGAAGTAGTTGAAAACAGTTTTGTTGTAATCATGCTATCAAAGAGTAAGAGCTCATCAGGTGAGGGATCTACTACTTCACCTTCAGTTAAGGCTCCTCAGACCAGTTCAGCTGCTACGCCAGCCCCTGCGTCAACAGCACCTCAAGCTCCTGCTACAGCTGGGGCACCGCCTGCACCTGCACCTGCACCTGCTCCTTCACCTTCACCAGCTCCAGCTCCTGCTGTGTCAGGGTCTGATATCTATGGGCAGGCAGCGTCTAATCTTGTTGCTGGGACCAACTTGGAGGGAACAATCCAGCAAATTCTTGATATGGGTGGAGGGAGCTGGGATAGGGATACTGTTGTCCGAGCTCTTCGTGCTGCTTATAACAACCCTGAGAGAGCTGTGGAATACTTGTATTCGGGTATCCCCGAGCAAGCTGAAGCTGCCCCTGTGGCTCGTGCGCCTGCAAGTGGTGCCCAAGCTGGAGATGCTCCCTCCGCAGCTCCACAAGCTGCACAAGCTGCACAACCTGCACAGCCTGCACCTGTTCCTTCAAGTGGACCTAATGCCAATCCTTTGGATCTCTTTCCTCAGGGTCTCCCAAATGTTGGTGCTGGTGCTGCTGGTGCTGGCAATCTTGATTTTCTGCGCAACAGTCAACAGTTCCAAGCGTTGCGAGCCATGGTGCAGGCCAATCCACAAATATTGCAGCCTATGCTTCAAGAGCTTGGGAAACAAAATCCTCATCTAATGAGGTTGATTCAAGAGCATCAAGCTGACTTCCTTCGCCTGATAAATGAACCTGTGGAAGGTGGTGAGGGGAATATATTGGGGCAGCTGGCTAATGCCATGCCGCAAACAATAGCTGTCACCCCTGAGGAGCGCCAAGCAATTGAACGTCTTGAAGCAATGGGATTTGATCGAGCACTTGTTTTGGAGGTGTACTTTGCTTGTAACAAAAATGAAGAATTGGCTGCTAACTACCTCTTAGATCACATGCACGAGTTTGAGGAATGA 1185 0.4945 MKIFVKTLKGTNFEIDVKPENTVAEVKKHIETVQGAAVYPAAQQMLIHQGKVLKDGTTLEENEVVENSFVVIMLSKSKSSSGEGSTTSPSVKAPQTSSAATPAPASTAPQAPATAGAPPAPAPAPAPSPSPAPAPAVSGSDIYGQAASNLVAGTNLEGTIQQILDMGGGSWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEAAPVARAPASGAQAGDAPSAAPQAAQAAQPAQPAPVPSSGPNANPLDLFPQGLPNVGAGAAGAGNLDFLRNSQQFQALRAMVQANPQILQPMLQELGKQNPHLMRLIQEHQADFLRLINEPVEGGEGNILGQLANAMPQTIAVTPEERQAIERLEAMGFDRALVLEVYFACNKNEELAANYLLDHMHEFEE 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4963g00001 394 MobiDBLite consensus disorder prediction 77 108 - -
Pral4963g00001 394 MobiDBLite consensus disorder prediction 206 254 - -
Pral4963g00001 394 SMART ubq_7 1 75 IPR000626 GO:0005515
Pral4963g00001 394 FunFam UV excision repair protein RAD23 homolog 149 199 - -
Pral4963g00001 394 SMART CBM 267 310 IPR006636 -
Pral4963g00001 394 Gene3D - 1 80 - -
Pral4963g00001 394 FunFam UV excision repair protein RAD23 homolog 341 389 - -
Pral4963g00001 394 SUPERFAMILY XPC-binding domain 265 331 IPR036353 GO:0003684|GO:0006289|GO:0043161
Pral4963g00001 394 CDD UBA1_Rad23_plant 150 199 - -
Pral4963g00001 394 SUPERFAMILY UBA-like 331 392 IPR009060 GO:0005515
Pral4963g00001 394 Gene3D - 342 389 - -
Pral4963g00001 394 Gene3D - 260 325 IPR036353 GO:0003684|GO:0006289|GO:0043161
Pral4963g00001 394 PRINTS DNA repair protein Rad23 signature 361 375 IPR004806 GO:0006289
Pral4963g00001 394 PRINTS DNA repair protein Rad23 signature 376 391 IPR004806 GO:0006289
Pral4963g00001 394 PRINTS DNA repair protein Rad23 signature 295 317 IPR004806 GO:0006289
Pral4963g00001 394 PRINTS DNA repair protein Rad23 signature 344 360 IPR004806 GO:0006289
Pral4963g00001 394 MobiDBLite consensus disorder prediction 114 134 - -
Pral4963g00001 394 ProSiteProfiles Ubiquitin domain profile. 1 79 IPR000626 GO:0005515
Pral4963g00001 394 CDD Ubl_Rad23 1 74 - -
Pral4963g00001 394 SUPERFAMILY UBA-like 154 207 IPR009060 GO:0005515
Pral4963g00001 394 Pfam UBA/TS-N domain 350 385 IPR015940 -
Pral4963g00001 394 Pfam UBA/TS-N domain 159 194 IPR015940 -
Pral4963g00001 394 NCBIfam UV excision repair protein Rad23 1 393 IPR004806 GO:0006289
Pral4963g00001 394 SMART uba_6 350 387 IPR015940 -
Pral4963g00001 394 SMART uba_6 156 196 IPR015940 -
Pral4963g00001 394 PANTHER UV EXCISION REPAIR PROTEIN RAD23 1 383 - -
Pral4963g00001 394 Gene3D - 149 199 - -
Pral4963g00001 394 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 153 197 IPR015940 -
Pral4963g00001 394 Pfam XPC-binding domain 269 324 IPR015360 GO:0003684|GO:0006289|GO:0043161
Pral4963g00001 394 Pfam Ubiquitin family 3 76 IPR000626 GO:0005515
Pral4963g00001 394 MobiDBLite consensus disorder prediction 77 139 - -
Pral4963g00001 394 FunFam UV excision repair protein RAD23 B 260 325 - -
Pral4963g00001 394 SUPERFAMILY Ubiquitin-like 1 80 IPR029071 -
Pral4963g00001 394 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 347 388 IPR015940 -
Pral4963g00001 394 FunFam UV excision repair protein RAD23 1 80 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4963g00001 Pral-Chr4963 25551 31824 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4963g00001 1 74 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 37.838 4.77e-08 49.7