Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4958g00030 ATGGGAAGAGGGAAGATTGAGATTAAAAGAATTGAAAACGCAAATAGCCGACAAGTGACATTTTCAAAGAGAAGAAGTGGGCTTCTGAAGAAGGCCTACGAGCTGTCGGTTCTGTGTGATGCCCAAGTAGCTGTGATTGTCTTTTCTCAACAAGGCAGGCTCTATGAGTTCTTCAGTTCTGAAAACATCATTGACCGATATGTTAAATCTGGCAAAAATGTTGATATCAACAAGTTGGAAGAGGAACAACTTATCCAGCAAATGAGGTCTAGCTGTGCAAGTATGGCGAGGAAAATTGAGCTCTTAGAACTTTCTCAAAGGAAACTGTTGGGACATAGCGTAAGTTGTTCTCATGAGGAACTTCAAGCAATTGAGTGCCAGCTTGAAAGAAGTTTGCTAAACATCAGAATAAGAAAGGATCAGCTATTTAGGGAGCAGCGTGAGCAACTGAAAAATGAGCTCGGAGAAAAGACATGGCAGCAATGGGCTAAACACAAAGAAGTAGCACAACAGAGTTCAAGTAAAAGCAGATTAAGCTCATTTGTGCAAACTGAATTACAGATTGGACTGCCAGAGACCTGA 582 0.4124 MGRGKIEIKRIENANSRQVTFSKRRSGLLKKAYELSVLCDAQVAVIVFSQQGRLYEFFSSENIIDRYVKSGKNVDINKLEEEQLIQQMRSSCASMARKIELLELSQRKLLGHSVSCSHEELQAIECQLERSLLNIRIRKDQLFREQREQLKNELGEKTWQQWAKHKEVAQQSSSKSRLSSFVQTELQIGLPET 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4958g00030 193 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Pral4958g00030 193 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pral4958g00030 193 SUPERFAMILY SRF-like 2 70 IPR036879 GO:0003677|GO:0046983
Pral4958g00030 193 ProSiteProfiles K-box domain profile. 85 174 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pral4958g00030 193 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 171 - -
Pral4958g00030 193 CDD MADS_MEF2_like 2 69 IPR033896 GO:0000977|GO:0045944
Pral4958g00030 193 Pfam K-box region 83 156 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pral4958g00030 193 Gene3D - 13 91 IPR036879 GO:0003677|GO:0046983
Pral4958g00030 193 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Pral4958g00030 193 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Pral4958g00030 193 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pral4958g00030 193 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pral4958g00030 193 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4958g00030 Pral-Chr4958 398035 412073 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4958g00030 1 154 MADS-box Gene Family AT2G45660 57.325 4.54e-53 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Pral4958g00030 K-box 1.1e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4958g00030 - - mof:131146736 204.527