Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4958g00027 ATGGGAAGAGGGAAGATTGAGATTAAAAGAATTGAAAACGCAAATAGCCGACAAGTGACATTTTCAAAGAGAAGAAGTGGGCTTCTGAAAAAGGCCTACGAGCTATCGGTTCTGTGTGATGCCCAAGTAGCTGTGATTGTCTTTTCTCCACAAGGCAGGCTCTATGAGTTCTTCAGTTCTGAAAACATCATTGACCGATATGTTAAATATGGCAAAAATGCTGATATCAACAAGTTGGCAGAGGAACAACTTATCCAGCAAATGAGGTCTACCTGTGCAAGTATGGCGAGGAAAATTGAGCTACTAGAACTTTCTCAAAGGAAACTGTTGGGACATAGCGTAAGTTGTTCTCATGAAGAACTTCAAGCAATTGAGGGCCAGCTTGAAAGAAGTTTGCAAAACATCAGAATAAGAAAGGCTCAGCTATTTAGGGAGCAGCGTGAGCAACTGAAAAATGAGCTGCGAGGGGTTAGGCGTCGTGGCGGATTCCTTCAGGCGCCGCAGTGCCTTTTACAGAATGGCTTTCCTTCGAGGCTAAGGCGCCGCGGCGCATGTGATAATTGGTCGTGGTGGATTATACCCAATAGGCTTCCTCCGAGACAGCTTGGGCGCCGCGACGGATTCAATAAGGCGCTGCGGCGCCTTTTACAGAGACGCACTCCTACTTCTCTGTTTGAGCCGCCGTGGCGTTTTCTCCTAGATGCCACGGCGGATGACTTCTTTTCAGCTCTTCTCAATTCCTTACTCTCCTCAGGCTTTGTTTCCTGCAAAATTGACTTTTAA 783 0.4649 MGRGKIEIKRIENANSRQVTFSKRRSGLLKKAYELSVLCDAQVAVIVFSPQGRLYEFFSSENIIDRYVKYGKNADINKLAEEQLIQQMRSTCASMARKIELLELSQRKLLGHSVSCSHEELQAIEGQLERSLQNIRIRKAQLFREQREQLKNELRGVRRRGGFLQAPQCLLQNGFPSRLRRRGACDNWSWWIIPNRLPPRQLGRRDGFNKALRRLLQRRTPTSLFEPPWRFLLDATADDFFSALLNSLLSSGFVSCKIDF 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4958g00027 260 CDD MADS_MEF2_like 2 70 IPR033896 GO:0000977|GO:0045944
Pral4958g00027 260 Gene3D - 13 89 IPR036879 GO:0003677|GO:0046983
Pral4958g00027 260 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 152 - -
Pral4958g00027 260 Coils Coil 140 160 - -
Pral4958g00027 260 Pfam K-box region 85 158 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pral4958g00027 260 SUPERFAMILY SRF-like 2 74 IPR036879 GO:0003677|GO:0046983
Pral4958g00027 260 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Pral4958g00027 260 ProSiteProfiles K-box domain profile. 85 174 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pral4958g00027 260 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pral4958g00027 260 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pral4958g00027 260 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pral4958g00027 260 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pral4958g00027 260 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Pral4958g00027 260 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4958g00027 Pral-Chr4958 339107 374405 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4958g00027 1 155 MADS-box Gene Family AT2G45660 57.595 9.53e-56 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Pral4958g00027 K-box 1.4e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4958g00027 - - qsa:O6P43_008287 191.045