Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4958g00026 ATGGGAAAAGGGAAGATTGAGATGAAAAGAATTGAAAACGCAGCTAGCAGACAAGTGACATTTTCAAAGAGAAGAAATGGGCTTTTAAAGAAAGCCTACGAGCTATCGGTCCTATGTGACGCCCAAGTAGCTGTGATAGTCTTTTCACAAAAAGGCAGACTCTATGAGTTCTTCAGTTCCGAAAACATTATTGATCGATACAATAAACATGGCAAAAATGTTCATACCAATGAGTTTGAAGAGCAACAACTAATTATCCAGCGCCTGAAGTCTAACTGTGCAAGCATGGCAAGGAAGATTGAGCTTCTAGAACTTTCACAAAGGAAGCTACTGGGACTTCATAACTTGGGTTGTTCTTATGAAGAACTTCAAGCAATGGAGGGTCAGCTCCAAAGGAGTTTACAAAACGTCAAAATGAGAAAGGCTCAGCTTGTAAGGGAGCAATTTGAGCAGCTGAAAAATAAGTTTGGGGAAAATGCGTGGCAGCAATGGGCTATACACAGAGGAGAAGCACATCAAAGTTCAAGTGAAAACAGCCGAAGATCATATGTTGAAACTGAATTACATATTGGACTGCCAGAGAAGCGTTTCTGA 594 0.4057 MGKGKIEMKRIENAASRQVTFSKRRNGLLKKAYELSVLCDAQVAVIVFSQKGRLYEFFSSENIIDRYNKHGKNVHTNEFEEQQLIIQRLKSNCASMARKIELLELSQRKLLGLHNLGCSYEELQAMEGQLQRSLQNVKMRKAQLVREQFEQLKNKFGENAWQQWAIHRGEAHQSSSENSRRSYVETELHIGLPEKRF 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4958g00026 197 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Pral4958g00026 197 Coils Coil 120 140 - -
Pral4958g00026 197 Gene3D - 13 84 IPR036879 GO:0003677|GO:0046983
Pral4958g00026 197 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 177 - -
Pral4958g00026 197 FunFam MADS-box transcription factor MADS-MC 13 83 - -
Pral4958g00026 197 CDD MADS_MEF2_like 2 70 IPR033896 GO:0000977|GO:0045944
Pral4958g00026 197 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pral4958g00026 197 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pral4958g00026 197 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pral4958g00026 197 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pral4958g00026 197 SUPERFAMILY SRF-like 2 75 IPR036879 GO:0003677|GO:0046983
Pral4958g00026 197 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Pral4958g00026 197 Pfam K-box region 85 156 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pral4958g00026 197 Coils Coil 86 106 - -
Pral4958g00026 197 ProSiteProfiles K-box domain profile. 86 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4958g00026 Pral-Chr4958 320401 329233 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4958g00026 1 155 MADS-box Gene Family AT2G45660 58.228 5.53e-54 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Pral4958g00026 K-box 3.7e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4958g00026 - - zju:125421449 202.216