Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4958g00006 ATGGATTTAGATGGCGGTAATAAGCGTGTCTTTCAGCGTCTCCGTGGTCCTCCTCCCGATGCCAAGCAACCGAAAGTGTGTTATCATTGGCAGGCAGGCAGGTGCAATAGATATCCGTGCCCCTTTCTACACAGTGAATTACCTCCTCCAACCGCCAACGGGACTTCTTCTAAAAGGTCCCATGGGTCCGCTGATGATTCAGGGTTCTCAGGTCCACGGAGGAATCCGAATTTTAGTGGAGCGTCAACGTGGGGCGGTGTTCGTGGTGGTAATAAATTAATTAGGAAGACCGAAAAGCTTTGTACTTATTGGATTCAGGGGAATTGTACTTACGGAGCCCAGTGCAAGTACCTGCACTCTTGGAGTGTAGGGGATGGTTTTTCCTTACTAACGCAGCTTGAAGGGCATCAGAAGGTTGTCACTGGAATATCTCTGCCATCTGGTTCAGATAAGCTTTATACTGGAAGTAAAGATGAGTCAGTAAGGCTTTGGGACTGCCGATCTGGTCAGTGTTTGGCTGTGATTGGTCTTGGTTGTGAAGTGGGTTGCATGATCTGTGAAGGGCCTTGGCTTTTTGTTGGTGTTCCTAACTGTGTTAAGGCTTGGAACACTCAAACATCGAGTGAACTGAGTCTGAGTGGCCCTGCTGGACAAGTTTACACTTTGGCTGTGGGTAACAATATGCTTTTTGCTGGTACACAGGAGGGGTCTATATTGGCATGGAAGTTCAATGCGGCTACTAACTCTTTTGAGCCTGTTACATCACTTAAGGGTCACACTGGTCCTGTTGTTTCATTTGTTGTTGGAGCAAATAGGCTCTACTCAGGTTCAATGGACAAGACAATAAGAGTCTGGAACCTTGAGACATTGCAGTGTTTGCAGACTTTAACTGGGCATACTTCAGTTGTGATGTCTGTTCTTTGCTGGGACCAGTTTCTTTTATCTGGTTCATTGGACAACACAGTAAAGGTTTGGGTAGCTACAGAAAGTGGGAACTTGGAAGTTACTTATACTCACAATGAGGAAGATGGTGTAATTAAACTCTGTGGGATGCATGATTCACAAGGCAAGCCCATTTTGCTGTGCTCTTGCAACAATAATACTGTACACCTCTATGATCTGCCTTCCTTCGCAGAGAGAGGCAAGATTTTTACAAAGCAAGAGGTTCGAGCTATTGAGGTTGGTCCTGGTGGTTTATTCTTCACCGGTGATGGAACAGGTCAAGTGAAAGTCTGGAATTGGTTGCCGGAGGCAGCTTCTTCCCAACCAATAAATGGCTCTTCCTAA 1287 0.46 MDLDGGNKRVFQRLRGPPPDAKQPKVCYHWQAGRCNRYPCPFLHSELPPPTANGTSSKRSHGSADDSGFSGPRRNPNFSGASTWGGVRGGNKLIRKTEKLCTYWIQGNCTYGAQCKYLHSWSVGDGFSLLTQLEGHQKVVTGISLPSGSDKLYTGSKDESVRLWDCRSGQCLAVIGLGCEVGCMICEGPWLFVGVPNCVKAWNTQTSSELSLSGPAGQVYTLAVGNNMLFAGTQEGSILAWKFNAATNSFEPVTSLKGHTGPVVSFVVGANRLYSGSMDKTIRVWNLETLQCLQTLTGHTSVVMSVLCWDQFLLSGSLDNTVKVWVATESGNLEVTYTHNEEDGVIKLCGMHDSQGKPILLCSCNNNTVHLYDLPSFAERGKIFTKQEVRAIEVGPGGLFFTGDGTGQVKVWNWLPEAASSQPINGSS 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4958g00006 428 ProSitePatterns Trp-Asp (WD) repeats signature. 152 166 IPR019775 -
Pral4958g00006 428 FunFam Zinc finger CCCH domain-containing protein 48 213 421 - -
Pral4958g00006 428 ProSiteProfiles Trp-Asp (WD) repeats profile. 256 295 IPR001680 GO:0005515
Pral4958g00006 428 Gene3D - 122 292 IPR015943 GO:0005515
Pral4958g00006 428 PRINTS G protein beta WD-40 repeat signature 273 287 IPR020472 -
Pral4958g00006 428 PRINTS G protein beta WD-40 repeat signature 152 166 IPR020472 -
Pral4958g00006 428 PRINTS G protein beta WD-40 repeat signature 313 327 IPR020472 -
Pral4958g00006 428 ProSiteProfiles Trp-Asp (WD) repeats profile. 133 174 IPR001680 GO:0005515
Pral4958g00006 428 SMART c3hfinal6 97 121 IPR000571 GO:0046872
Pral4958g00006 428 SMART c3hfinal6 23 46 IPR000571 GO:0046872
Pral4958g00006 428 ProSiteProfiles Zinc finger C3H1-type profile. 21 47 IPR000571 GO:0046872
Pral4958g00006 428 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 256 289 - -
Pral4958g00006 428 PANTHER - 91 421 IPR044715 -
Pral4958g00006 428 Pfam Zinc finger domain 101 119 - -
Pral4958g00006 428 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 133 170 - -
Pral4958g00006 428 Gene3D - 293 428 IPR015943 GO:0005515
Pral4958g00006 428 MobiDBLite consensus disorder prediction 49 83 - -
Pral4958g00006 428 ProSitePatterns Trp-Asp (WD) repeats signature. 273 287 IPR019775 -
Pral4958g00006 428 MobiDBLite consensus disorder prediction 1 23 - -
Pral4958g00006 428 Pfam WD domain, G-beta repeat 291 325 IPR001680 GO:0005515
Pral4958g00006 428 Pfam WD domain, G-beta repeat 129 165 IPR001680 GO:0005515
Pral4958g00006 428 Pfam WD domain, G-beta repeat 251 286 IPR001680 GO:0005515
Pral4958g00006 428 Gene3D - 21 121 - -
Pral4958g00006 428 ProSiteProfiles Trp-Asp (WD) repeats profile. 296 325 IPR001680 GO:0005515
Pral4958g00006 428 ProSiteProfiles Zinc finger C3H1-type profile. 95 122 IPR000571 GO:0046872
Pral4958g00006 428 SMART WD40_4 249 286 IPR001680 GO:0005515
Pral4958g00006 428 SMART WD40_4 126 165 IPR001680 GO:0005515
Pral4958g00006 428 SMART WD40_4 205 242 IPR001680 GO:0005515
Pral4958g00006 428 SMART WD40_4 376 413 IPR001680 GO:0005515
Pral4958g00006 428 SMART WD40_4 289 326 IPR001680 GO:0005515
Pral4958g00006 428 SMART WD40_4 330 373 IPR001680 GO:0005515
Pral4958g00006 428 SUPERFAMILY WD40 repeat-like 111 414 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4958g00006 Pral-Chr4958 51239 59348 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4958g00006 106 325 Acyl Lipid Metabolism Gene Families AT3G18860 25.225 1.27e-08 55.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pral4958g00006 WD40 0.00019 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4958g00006 - - qsa:O6P43_008277 687.952