Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4958g00002 ATGCTGTATGCCGTTGAGCCAATTTTAACTGTTACTTTTGTCACAAACATGAACATAATATGGGAGAAGATCATGTCGACACTAAGAGCTCAGATCTTTGGAAGGATATTGATGCAAAAGGTGGAATTTTTTGACAGATACAAGGTTGGTGAACTCACTGGATTGCTAACATCCGATCTGGGTTCTCTTAAAGATATTGTGAGTGAAAATGTTGCAAGGGATCGTGGATTCAGGGCATTATCTGAGGTTATTGGGACAATATGCATACTTTTTGCTTTATCTCCTCAACTTGCTCCAGTTTTGGGTATCCTAGTGCTCACAGTTTCTGTTTCAGTCGCTGTCTACAAGAGATCAACTCTGCCAGTTTTTAAAGCACATGGGTTGGTTCAAGCATCCATATCTGACTGTGTGGCAGAAACATTTTCTGCTATCCGTACAGTGAGATCCTTTGGTGGAGAGAAACGCCAAATGTTCACATTTGCTAACCAGGTTCTTTCATACCAATCAAGCGGGATAAAGCTTGCCACTTTTAAATCTCTAAATGAGTCCATGACTAGAGTTGCTGTATATGTTTCTTTGCTAGCATTATATATCCTTGGAGGAAACAAAGTTAAAGCGGGTGAACTCTCTGTTGGAACTGTGGCGTCTTTCATTGGATACACTTTCACATTAACTTTTGCTGTTCAAGGAATGGTTAATACTTTTGGAGATTTGCGTGGAGCTATTGCTGCAGTTGAGAGGATCAACTATGTTTTCTCTGAGGTTCAAATTGATGATGCCCTTGCTTATGGCTTAGAAAGAGAACTGAAACAGAAAGAATTAAATGATGATAACTATAAACTGTTCTTCTCTGATAATTTTACTGAGAAAAACCAACGAAAATACTTGCATTACATGTCAGCATTGAAATCATCAAGCCATTTGTACAACTTAGCTTGGTCTGGAGATGTTTGTCTTGAAGATGTATATTTCTCTTATCCTTTAAGGCCAGATGTGGAGATCTTAAGTGGGTTAAATTTGACACTAAAATGTGGTACTATAACTGCATTGGTGGGTCCTAGTGGTGCAGGAAAAAGTACAGTAGTACAGCTATTGGCTCGGTTTTATGAGCCAACAAGAGGTCATATAACAGTTGCTGGAGAGGACGTTCTAACACTTGACAAGAGCGAATGGGCTCGAGCTGTCTCTATTGTAAATCAAGAGCCTGTTCTGTTTTCGGTCTCTGTTGGGGAAAATATTGCATATGGGCTTCCGGATGATAATGTTTCTAAAGAAGACGTTATCAAGGCAGCAAAAGCTGCAAATGCTCACGACTTCATACTTTCACTTCCACAGGGTTATGATACACTTGTTGGTGAGCGTGGAGGCCTATTAAGTGGGGGACAGAGGCAGAGAATTGCTATTGCTCGAGCACTCTTAAAGAACGCCCCAATTCTTATACTTGATGAGGCCACCAGTGCCTTAGATGCTGTTAGTGAGAGATTGGTCCAGGATGCTCTCAACCATTTGATGAAGGGGAGGACAACATTAGTGATTGCTCACCGATTGAGCACAGTTCAAAATGCCCATCAAATTGCACTGTGCTCTGATGGCAAGATTGCAGAACTAGGAACACACTATGAGTTGTTGGCCAAGAAGGGCCAATATGCTTCACTGGTTGGTACTCAAAGGCTTGCATTTGAATGA 1686 0.4098 MLYAVEPILTVTFVTNMNIIWEKIMSTLRAQIFGRILMQKVEFFDRYKVGELTGLLTSDLGSLKDIVSENVARDRGFRALSEVIGTICILFALSPQLAPVLGILVLTVSVSVAVYKRSTLPVFKAHGLVQASISDCVAETFSAIRTVRSFGGEKRQMFTFANQVLSYQSSGIKLATFKSLNESMTRVAVYVSLLALYILGGNKVKAGELSVGTVASFIGYTFTLTFAVQGMVNTFGDLRGAIAAVERINYVFSEVQIDDALAYGLERELKQKELNDDNYKLFFSDNFTEKNQRKYLHYMSALKSSSHLYNLAWSGDVCLEDVYFSYPLRPDVEILSGLNLTLKCGTITALVGPSGAGKSTVVQLLARFYEPTRGHITVAGEDVLTLDKSEWARAVSIVNQEPVLFSVSVGENIAYGLPDDNVSKEDVIKAAKAANAHDFILSLPQGYDTLVGERGGLLSGGQRQRIAIARALLKNAPILILDEATSALDAVSERLVQDALNHLMKGRTTLVIAHRLSTVQNAHQIALCSDGKIAELGTHYELLAKKGQYASLVGTQRLAFE 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4958g00002 561 Gene3D - 315 559 IPR027417 -
Pral4958g00002 561 SMART AAA_5 344 538 IPR003593 GO:0016887
Pral4958g00002 561 SUPERFAMILY ABC transporter transmembrane region 2 253 IPR036640 GO:0005524|GO:0016020
Pral4958g00002 561 Pfam ABC transporter 335 486 IPR003439 GO:0005524
Pral4958g00002 561 Pfam ABC transporter transmembrane region 8 227 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pral4958g00002 561 PANTHER ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL 2 559 IPR039421 -
Pral4958g00002 561 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 317 555 IPR003439 GO:0005524
Pral4958g00002 561 FunFam ATP-binding cassette sub-family B member 8, mitochondrial 315 559 - -
Pral4958g00002 561 ProSitePatterns ABC transporters family signature. 458 472 IPR017871 GO:0005524|GO:0016887
Pral4958g00002 561 Gene3D ABC transporter type 1, transmembrane domain 1 314 IPR036640 GO:0005524|GO:0016020
Pral4958g00002 561 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 307 556 IPR027417 -
Pral4958g00002 561 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 1 240 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pral4958g00002 561 CDD ABC_MTABC3_MDL1_MDL2 319 556 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4958g00002 Pral-Chr4958 30503 36529 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4958g00002 314 561 Calmodulin-binding Proteins AT2G36910 55.159 4.77e-76 260
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4958g00002 K05657 - gmx:100791034 940.258