Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4954g00008 ATGGATGAATATCAAGAGATGGAGAGATTTGGTATGGATAATGATTTTGAAGGCGGTGAATGGATTGGTGGTGAGTTCTACTATCGAAAGCGCAAAGAAAAACGCACTCAAACTAGAGAAGATGTTCTTTATGGGGTGTTTGCAGACTCTGATGATGACGATGATGATTATTCAAGCAGAAAACGGAGAAAAGATCGTGACTTATCTAAGAAGCCTGACCTCAGCAAGCCTGTGAATTTTGTCTCTACTGGAACTTTTATGCCTAATCAAGATGATAACCATTCTAAAGAACAGATTGAAGAAGAAAGTTATGCTAGTGAGGATAGGCCAGGTTTAGGTCTTGGCATGGGGACTACTAGCACTTCTGGTTCTGGGTTAGGTTTTAATACCAGTCATCGTGAAAATGCTTCTGATGGTGATAATGATGATGATGGTTTTTTGCCTACAGCGTTTGGAAAGAAGATTCATGAGGGAGCAATGAGAAGGGAGAAGGAAAAGGAGAGAGCAAAATTGGAGAAGAAGAGAGCTCAAGGGAAAACTCAAGCTGAAGATGGATTTTCAGATGTTGGGAAGTTTGAGAAGTATACAAAGGGGATTGGAATGAAGTTGTTGGAGAAAATGGGCTATAAAGGAGGTGGTCTTGGGAAGAATGAACAGGGTATTGTAGCTCCTGTTGAGGCCCATATGAGGGCCAAGAATACAGGCATTGGATTTAATGACTCGAAGGCCACAACTCCTTTGCCAAGTGTGCAAGTTGAGAAGACAGCATTGCCAGGAGTTGCTCAACCTACGACTGTCAGAGCAAAGGAAAGATTATGGTCAAAGAAATCAAGGTCAAAGAAGAAGAAAGATGAGGAAGATTATATTACTGCTGAGGAATTGTTAGCAACCAATCAAGAACAGGGTCTGGAGGTTGTTCAGAAGGTTTTTGATATGAGAGGGCCACAGGTTCGAGTAATTACAAATTTGTCTGATTTGAATGCTGAGGAGAAGGCTAAGGAAAATGATGTTCCAATGCCAGAGCTTCAACATAACGTGGGGTTAATTGTTAGGTTGGCTGAGGCAGATATCCAAGAGATTGATAGAAATTTGAGGGGAGAGAGGGAGACGGCACTTAGCTTGAAAAAAGAAAAAGAGAAGTTAGAAATTGAGGCAGCACACCAAAAAAAGCAGTTGGAAGATTTGGAGCAAATAACAAGTGTGCTGGACCGAGTCGGAGAAGAGAACTCAATGGGGACATTGACATTGGATTTGCTTGCCCAGTGCTTTACTGACTTGCGGAAAAGATACACTCATAGCTACAAGTTGTGTAACTTGTCATGTATTGCTTGCTCATATGCTTTGCCTTTGTTTATTAGAGTATTCCAAGGATGGGATCCTCTTCGAAATCCATCACATGGGTTAGAATTGGTATCACGGTGGAAAACATTGCTTCAAGAAGAAGAGTGCCTTGATATCTGGGATGTAACATCACCTTATACTCAATTGATTTCTGAAGTTGTATTACCAGCTGTTAGGATTTCAGGTATCAATACCTGGCAGGCACGCGATCCTGAGCCAATGTTACGGTTTCTGGAGTCATGGGAAAAGTTGCTTCCTTCTTCAGTTCTCACAGCCATGTTGGACAATATAGTCATGCCAAAATTATCAAGTGCTGTAGATACATGGGAACCACATCGTGAGACAATTCCTATCCATACTTGGGTGCACCCATGGTTACCTTTGTTAGGGCACAAGTTAGAGGGAATGTACCAGATGATACGCTTCAAATTGAGTACTGTTCTTGGTGCTTGGCATCCAAGCGATGGCTCTGCGTATGCTATATTGTCACCTTGGAAGACCGTATTTGATTCAGTGAGTTGGGAACAGCTCATGCTTCGATTTATTGTGCCAAAGTTGCAGCTTGTCTTGCAAGAGTTCCAAGTGAATCCAGCTGATCAGAAACTTGATCAGTTTTATTGGGTGATGAATTGGGCTTCTGCTGTCCCAATTCATCTGATGGTTGATATAATGGAAAAGTTCTTCTTCACCAAGTGGCTTCAGGTTTTGTATCATTGGTTGTGCTCAAACCCTAACTTTGAAGAAGTAACAAAATGGTATTTGGGTTGGAAAGAGCTTATTCCAAAGGAACTTCTGGCTAACGAAAGTATTAGGTATCAGCTAAACCGTGGTCTTGATATGATGAACCAGGCTGTTGAAGGTATGGAGGTGGTCCAGCCTGGCTTGAAAGAAAATATCAGCTATCTGAGGGTACTTGAGCAAAGGCAGTTTGAGGCTCAGCAGAAAGCAGCAGCTAATGCTCAAACCCAAGCTCCTTCAGGCTTGGGGGGTGCTGCCCATATGGAGAGTGCAGCAGGTGTGCATGAGATGAGCTTAAAGGAAGTCATTGAGGCCCATGCCCAGCAACATGGTTTGCTATTCAAGCTGAAACCTGGCAGAATGCATAATGGTCATCAAATATATGGGTTTGGTAATGTCAGCATCATAATAGATTCCCTAAATCAAAAGGTATATGCCCAAACTGAGGATGCATGGTCTTTGGAATCTCTCCAAGGCTTACTGGAGCTGCATAATAAGTCCATTGGTCGGAGACGAGGATTGTAA 2604 0.4247 MDEYQEMERFGMDNDFEGGEWIGGEFYYRKRKEKRTQTREDVLYGVFADSDDDDDDYSSRKRRKDRDLSKKPDLSKPVNFVSTGTFMPNQDDNHSKEQIEEESYASEDRPGLGLGMGTTSTSGSGLGFNTSHRENASDGDNDDDGFLPTAFGKKIHEGAMRREKEKERAKLEKKRAQGKTQAEDGFSDVGKFEKYTKGIGMKLLEKMGYKGGGLGKNEQGIVAPVEAHMRAKNTGIGFNDSKATTPLPSVQVEKTALPGVAQPTTVRAKERLWSKKSRSKKKKDEEDYITAEELLATNQEQGLEVVQKVFDMRGPQVRVITNLSDLNAEEKAKENDVPMPELQHNVGLIVRLAEADIQEIDRNLRGERETALSLKKEKEKLEIEAAHQKKQLEDLEQITSVLDRVGEENSMGTLTLDLLAQCFTDLRKRYTHSYKLCNLSCIACSYALPLFIRVFQGWDPLRNPSHGLELVSRWKTLLQEEECLDIWDVTSPYTQLISEVVLPAVRISGINTWQARDPEPMLRFLESWEKLLPSSVLTAMLDNIVMPKLSSAVDTWEPHRETIPIHTWVHPWLPLLGHKLEGMYQMIRFKLSTVLGAWHPSDGSAYAILSPWKTVFDSVSWEQLMLRFIVPKLQLVLQEFQVNPADQKLDQFYWVMNWASAVPIHLMVDIMEKFFFTKWLQVLYHWLCSNPNFEEVTKWYLGWKELIPKELLANESIRYQLNRGLDMMNQAVEGMEVVQPGLKENISYLRVLEQRQFEAQQKAAANAQTQAPSGLGGAAHMESAAGVHEMSLKEVIEAHAQQHGLLFKLKPGRMHNGHQIYGFGNVSIIIDSLNQKVYAQTEDAWSLESLQGLLELHNKSIGRRRGL 867
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4954g00008 867 PANTHER TUFTELIN-INTERACTING PROTEIN 11-RELATED 1 852 IPR045211 GO:0000390
Pral4954g00008 867 MobiDBLite consensus disorder prediction 93 107 - -
Pral4954g00008 867 Pfam G-patch domain 196 237 IPR000467 GO:0003676
Pral4954g00008 867 MobiDBLite consensus disorder prediction 54 73 - -
Pral4954g00008 867 MobiDBLite consensus disorder prediction 147 184 - -
Pral4954g00008 867 Coils Coil 350 398 - -
Pral4954g00008 867 PIRSF TFIP11 1 860 IPR024933 -
Pral4954g00008 867 Coils Coil 159 181 - -
Pral4954g00008 867 MobiDBLite consensus disorder prediction 32 184 - -
Pral4954g00008 867 Pfam Tuftelin interacting protein N terminal 6 103 IPR022159 -
Pral4954g00008 867 MobiDBLite consensus disorder prediction 115 134 - -
Pral4954g00008 867 MobiDBLite consensus disorder prediction 76 92 - -
Pral4954g00008 867 ProSiteProfiles G-patch domain profile. 196 241 IPR000467 GO:0003676
Pral4954g00008 867 SMART G-patch_5 194 239 IPR000467 GO:0003676
Pral4954g00008 867 Pfam GC-rich sequence DNA-binding factor-like protein 417 683 IPR022783 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4954g00008 Pral-Chr4954 49012 54217 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4954g00008 196 237 C2H2 Transcription Factor Family AT5G26610 47.619 4.06e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4954g00008 K13103 - gmx:100783256 1346.26