LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pral4950g00006	ATGGCTTCTCTCCTACCATTTCAGGACCTCAATTGCTTCCCTAATTCTCACACTGCTATCACTAACGCCAATGATCCCGTCAATGTCGGACCCACCTCCTCCTCCAAAACGTGCATTCCAACATTGGTGCCTAAGCTGGAGCCTTTGGACGATTTGTTCGAACCCCGAGAGCAAGAGCAACCCCAAGAAACCATCATCTCAACTCCTAACCCTGAGAATGCATCGTCTAGTTCCAAGCCTGCTAGTGCTGGAATCCCACAAGGCGTGCCGATTGAAGACCATGTGTATTCAGAGTTCAATCGAATTTCTCAGATGTTTTGGGCAGCATTTCCCGACAATGTACAACAATCCGGAGACGCCAACGTTTCAAACCCAGATTCGAGGGCAATCGTTCCTGTACCACAGGAGAACCCGCACGTTTCTTCGGTGGTGGTTGCTACTCGGAAGCGAAACTCCCAACGCGTGAAGGAGCTGGTAAGGGTTGGCGATATTACGATTGAGGACGAAAGGAATCATCGTGATATAGTCAGAAGGACCAGGATGGTGTACGATTCGTTGCGCATTTTGACATCAATCGAGGAGAAGAAAAGTAGTGATGATTCAGCTAAACGTAAGCGACCTCGAGGTGATACGCGTGCTGCCACCTTGTTGAGATACCGTGGGCTATGGCTTAATCGAGATAAGCGGATAGTGGGTGCTATTCCAGGCATTAATGTTGGTGATTTATTCCTTTATAGGATGGAACTGTTAGTAGTTGGCTTGCACGGTCAAACACAGGCTGGAATTGATTATCTTCCCGCAAGCATGAGTCCAAATAGGGAGCCAATAGCAACTAGTGTTATTGTATCAGGTGGGTATGAGGATGATATAGATGATGGCGACGTTATAATTTATACCGGACATGGTGGTCAAGATGCTAAGCATTCAAAGCAAATTGCTCATCAGAAGTTGGAAGGAGGAAACCTTGCATTGGAAAGAAGCATGCGGTATGGCGTTGAAGTACGGGTTATTCGGGGGATTAAATATGAGGGAAGTGCTTCAAGTTCAAACAAGGTTTATGTGTATGATGGCTTGTATCGAATTGCTGCTTGCTGGTTTGAATTGGGTAAGTCTGGTTTTGGAGTTTACAAGTACAAGCTTGTGAGAATTGATGGGCAAGAAAAATTGGGCAGTGCAATTCTTAAACATGCTCGGCTTCTCAAGGTTGATCCACTTCTATCTGATTCTATGTGTTGTTTTAGTCTTGACATTTCGCTTAACAAGGAGACTGCTCCCGTCCGTCTCTTCAATGACATTGATGATGATGATGGTCCTCTTCGTTTTGAGTATCTTAAAAGGACAAGTTTTCCTCATTTTGTATTTCATCAGAGTGGAACTGCTACTGGTTGTGAGTGCGTGGGAGGTTGTGCTGATGACTGTTTTTGTGCTTTGAAAAATGGAGGTGGATTTCCTTATAATAGAACTGGTATTCTGTTGAGAGGGAAACCAGTAATCTTTGAATGTGGTCCATTCTGCCGTTGTCCTCCAAATTGTCAAAATCGTGTGACGCAAAAAGGGTTGAAAGTTAGATTGGAAGTATTTAGGTCTAGAGAAACAGGTTGGGGAGTTAGGTCCCTGGATATTATTCATGCTGGTGCTTTTGTCTGTGAATATACAGGGGTTGTAGTGACAAGGGGACAAGCACAAATTTTGACTATGAATGGTGATGCAATGGTGTATCCAAGTCGGTTTCCAGATAGGTGGGCAGAATGGGGGAATTTATCTCAGATATACTCGAATTATGTGCGTCCATCATATCCATCAATTCCTCCATTAGATTTCGCCTTGGATGTGTCAACAATGAGGAACGTTGCTTTCTATATCAGGCACAGTTCAACACCAAATATGTTTGTTCAATTTGTTCTCTATGATCACAATAACTTGATGTTTCCTCACCTTATGCTTTTTGCAATGGAGACCATCCCTCCATTGAGGGAGCTCACTCTGGATTATGGAGTGGTTGATGATTGTACAGGCAAACTCTTCATATGTAACTGA	2037	0.4394	MASLLPFQDLNCFPNSHTAITNANDPVNVGPTSSSKTCIPTLVPKLEPLDDLFEPREQEQPQETIISTPNPENASSSSKPASAGIPQGVPIEDHVYSEFNRISQMFWAAFPDNVQQSGDANVSNPDSRAIVPVPQENPHVSSVVVATRKRNSQRVKELVRVGDITIEDERNHRDIVRRTRMVYDSLRILTSIEEKKSSDDSAKRKRPRGDTRAATLLRYRGLWLNRDKRIVGAIPGINVGDLFLYRMELLVVGLHGQTQAGIDYLPASMSPNREPIATSVIVSGGYEDDIDDGDVIIYTGHGGQDAKHSKQIAHQKLEGGNLALERSMRYGVEVRVIRGIKYEGSASSSNKVYVYDGLYRIAACWFELGKSGFGVYKYKLVRIDGQEKLGSAILKHARLLKVDPLLSDSMCCFSLDISLNKETAPVRLFNDIDDDDGPLRFEYLKRTSFPHFVFHQSGTATGCECVGGCADDCFCALKNGGGFPYNRTGILLRGKPVIFECGPFCRCPPNCQNRVTQKGLKVRLEVFRSRETGWGVRSLDIIHAGAFVCEYTGVVVTRGQAQILTMNGDAMVYPSRFPDRWAEWGNLSQIYSNYVRPSYPSIPPLDFALDVSTMRNVAFYIRHSSTPNMFVQFVLYDHNNLMFPHLMLFAMETIPPLRELTLDYGVVDDCTGKLFICN	678

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Pral4950g00006	678	SMART	G9a_1	227	386	IPR003105	-
Pral4950g00006	678	MobiDBLite	consensus disorder prediction	60	83	-	-
Pral4950g00006	678	ProSiteProfiles	Pre-SET domain profile.	461	519	IPR007728	GO:0005634\|GO:0008270\|GO:0034968\|GO:0042054
Pral4950g00006	678	SUPERFAMILY	SET domain	410	666	IPR046341	-
Pral4950g00006	678	Pfam	SAD/SRA domain	231	386	IPR003105	-
Pral4950g00006	678	SUPERFAMILY	PUA domain-like	213	395	IPR015947	-
Pral4950g00006	678	ProSiteProfiles	Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile.	85	678	IPR025794	GO:0016571
Pral4950g00006	678	Gene3D	SET domain	394	678	IPR046341	-
Pral4950g00006	678	PANTHER	HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR	80	666	-	-
Pral4950g00006	678	Pfam	SET domain	533	665	IPR001214	GO:0005515

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Pral4950g00006	Pral-Chr4950	377259	382575	Dispersed/Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pral4950g00006	148	666	Su(var)3-9 homologs	AT5G04940	39.429	8.45e-110	345

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	SET	Pral4950g00006		SAD_SRA	4.8e-49	CL0178

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pral4950g00006	K11420		-	csv:101222210	877.47

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