Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4950g00006 ATGGCTTCTCTCCTACCATTTCAGGACCTCAATTGCTTCCCTAATTCTCACACTGCTATCACTAACGCCAATGATCCCGTCAATGTCGGACCCACCTCCTCCTCCAAAACGTGCATTCCAACATTGGTGCCTAAGCTGGAGCCTTTGGACGATTTGTTCGAACCCCGAGAGCAAGAGCAACCCCAAGAAACCATCATCTCAACTCCTAACCCTGAGAATGCATCGTCTAGTTCCAAGCCTGCTAGTGCTGGAATCCCACAAGGCGTGCCGATTGAAGACCATGTGTATTCAGAGTTCAATCGAATTTCTCAGATGTTTTGGGCAGCATTTCCCGACAATGTACAACAATCCGGAGACGCCAACGTTTCAAACCCAGATTCGAGGGCAATCGTTCCTGTACCACAGGAGAACCCGCACGTTTCTTCGGTGGTGGTTGCTACTCGGAAGCGAAACTCCCAACGCGTGAAGGAGCTGGTAAGGGTTGGCGATATTACGATTGAGGACGAAAGGAATCATCGTGATATAGTCAGAAGGACCAGGATGGTGTACGATTCGTTGCGCATTTTGACATCAATCGAGGAGAAGAAAAGTAGTGATGATTCAGCTAAACGTAAGCGACCTCGAGGTGATACGCGTGCTGCCACCTTGTTGAGATACCGTGGGCTATGGCTTAATCGAGATAAGCGGATAGTGGGTGCTATTCCAGGCATTAATGTTGGTGATTTATTCCTTTATAGGATGGAACTGTTAGTAGTTGGCTTGCACGGTCAAACACAGGCTGGAATTGATTATCTTCCCGCAAGCATGAGTCCAAATAGGGAGCCAATAGCAACTAGTGTTATTGTATCAGGTGGGTATGAGGATGATATAGATGATGGCGACGTTATAATTTATACCGGACATGGTGGTCAAGATGCTAAGCATTCAAAGCAAATTGCTCATCAGAAGTTGGAAGGAGGAAACCTTGCATTGGAAAGAAGCATGCGGTATGGCGTTGAAGTACGGGTTATTCGGGGGATTAAATATGAGGGAAGTGCTTCAAGTTCAAACAAGGTTTATGTGTATGATGGCTTGTATCGAATTGCTGCTTGCTGGTTTGAATTGGGTAAGTCTGGTTTTGGAGTTTACAAGTACAAGCTTGTGAGAATTGATGGGCAAGAAAAATTGGGCAGTGCAATTCTTAAACATGCTCGGCTTCTCAAGGTTGATCCACTTCTATCTGATTCTATGTGTTGTTTTAGTCTTGACATTTCGCTTAACAAGGAGACTGCTCCCGTCCGTCTCTTCAATGACATTGATGATGATGATGGTCCTCTTCGTTTTGAGTATCTTAAAAGGACAAGTTTTCCTCATTTTGTATTTCATCAGAGTGGAACTGCTACTGGTTGTGAGTGCGTGGGAGGTTGTGCTGATGACTGTTTTTGTGCTTTGAAAAATGGAGGTGGATTTCCTTATAATAGAACTGGTATTCTGTTGAGAGGGAAACCAGTAATCTTTGAATGTGGTCCATTCTGCCGTTGTCCTCCAAATTGTCAAAATCGTGTGACGCAAAAAGGGTTGAAAGTTAGATTGGAAGTATTTAGGTCTAGAGAAACAGGTTGGGGAGTTAGGTCCCTGGATATTATTCATGCTGGTGCTTTTGTCTGTGAATATACAGGGGTTGTAGTGACAAGGGGACAAGCACAAATTTTGACTATGAATGGTGATGCAATGGTGTATCCAAGTCGGTTTCCAGATAGGTGGGCAGAATGGGGGAATTTATCTCAGATATACTCGAATTATGTGCGTCCATCATATCCATCAATTCCTCCATTAGATTTCGCCTTGGATGTGTCAACAATGAGGAACGTTGCTTTCTATATCAGGCACAGTTCAACACCAAATATGTTTGTTCAATTTGTTCTCTATGATCACAATAACTTGATGTTTCCTCACCTTATGCTTTTTGCAATGGAGACCATCCCTCCATTGAGGGAGCTCACTCTGGATTATGGAGTGGTTGATGATTGTACAGGCAAACTCTTCATATGTAACTGA 2037 0.4394 MASLLPFQDLNCFPNSHTAITNANDPVNVGPTSSSKTCIPTLVPKLEPLDDLFEPREQEQPQETIISTPNPENASSSSKPASAGIPQGVPIEDHVYSEFNRISQMFWAAFPDNVQQSGDANVSNPDSRAIVPVPQENPHVSSVVVATRKRNSQRVKELVRVGDITIEDERNHRDIVRRTRMVYDSLRILTSIEEKKSSDDSAKRKRPRGDTRAATLLRYRGLWLNRDKRIVGAIPGINVGDLFLYRMELLVVGLHGQTQAGIDYLPASMSPNREPIATSVIVSGGYEDDIDDGDVIIYTGHGGQDAKHSKQIAHQKLEGGNLALERSMRYGVEVRVIRGIKYEGSASSSNKVYVYDGLYRIAACWFELGKSGFGVYKYKLVRIDGQEKLGSAILKHARLLKVDPLLSDSMCCFSLDISLNKETAPVRLFNDIDDDDGPLRFEYLKRTSFPHFVFHQSGTATGCECVGGCADDCFCALKNGGGFPYNRTGILLRGKPVIFECGPFCRCPPNCQNRVTQKGLKVRLEVFRSRETGWGVRSLDIIHAGAFVCEYTGVVVTRGQAQILTMNGDAMVYPSRFPDRWAEWGNLSQIYSNYVRPSYPSIPPLDFALDVSTMRNVAFYIRHSSTPNMFVQFVLYDHNNLMFPHLMLFAMETIPPLRELTLDYGVVDDCTGKLFICN 678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4950g00006 678 SMART G9a_1 227 386 IPR003105 -
Pral4950g00006 678 MobiDBLite consensus disorder prediction 60 83 - -
Pral4950g00006 678 ProSiteProfiles Pre-SET domain profile. 461 519 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Pral4950g00006 678 SUPERFAMILY SET domain 410 666 IPR046341 -
Pral4950g00006 678 Pfam SAD/SRA domain 231 386 IPR003105 -
Pral4950g00006 678 SUPERFAMILY PUA domain-like 213 395 IPR015947 -
Pral4950g00006 678 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 85 678 IPR025794 GO:0016571
Pral4950g00006 678 Gene3D SET domain 394 678 IPR046341 -
Pral4950g00006 678 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 80 666 - -
Pral4950g00006 678 Pfam SET domain 533 665 IPR001214 GO:0005515
Pral4950g00006 678 SMART preset_2 414 506 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Pral4950g00006 678 ProSiteProfiles SET domain profile. 522 665 IPR001214 GO:0005515
Pral4950g00006 678 ProSiteProfiles YDG domain profile. 232 382 IPR003105 -
Pral4950g00006 678 Pfam Pre-SET motif 418 514 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Pral4950g00006 678 Gene3D - 226 393 IPR036987 -
Pral4950g00006 678 MobiDBLite consensus disorder prediction 56 87 - -
Pral4950g00006 678 SMART set_7 522 671 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4950g00006 Pral-Chr4950 377259 382575 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4950g00006 148 666 Su(var)3-9 homologs AT5G04940 39.429 8.45e-110 345
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Pral4950g00006 SAD_SRA 4.8e-49 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4950g00006 K11420 - csv:101222210 877.47