Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4943g00006 ATGTCATCATCGAAAACTCCGTGTGCCGCGTGCAAGCTTCAGAGGCGAAAATGCACTCAAGAATGCGTCTTCGCACCATACTTCCCGCCGGACAACCCTCGCAAGTTCTCTAACGTCCAACAGGTGTTCGGCGCTAGCAATGTTTCTAAGCTTCTCACCGAGCTCAACGTGGCTCACCGCGAAGAAGCCGTCAGGTCTTTGGCTTACGAAGCCGAGGCTCGGCTCCGAGATCCAGTCTACGGCTGCGTCGGCCTCATCTCTGTGCTCCAGCAGAGGCTGAGGCACGTACAAAATGAAGTCGACAAGGCGAAGAAGGAGCTCGCTACTTATATAGGCCCTCAGGCTCTACAACCTATGGTTCCCGTTTTAGACCCTCATCACGGAATGGTCCCGCTTCACCCTCACCACCAGGGCAATGTTTATGGTCCCTCAGTTTTCCCGTACAATAACATGCCGCCGCAGGCTATGGGGGCGCGCGGCGGACAACTGGTGATTCGTGAACCTCAGCAGCAGCATCGTGACGAGCAGCAGATGTTGGGGTCGCAGTTAGCGACGGATATGGAGGTGAGGCAGGTGCAAGAGTTGTTTGGGATTTATGATCAGCAACAACAACCGCCGACGACGCAGCAGCAGCAGAAGGACTTTATGAGTTACGGTGGCGGAGGGGGAGCTGAAATGGGCTCGGTTTCTGGGAGTGGGTTTAATCAACCTCCAGAAATGTCGCCATCGCTGGCTTTGAACACATATGACAACACTTACCGTTCAGTACAACTACAGCAAAGCCAAGGAGGAGATCAGCAGCATCACCATCATCAAGCTCCGCGCCACCATCTTCAAGAGCAGATGCTTCTACCGCCGCAGCAGCCACAGCAGCCGCAGCACCAGAATCAGCCTCTTCACCATCAGCTTCAAGAACAGTTACTTTTATCGCCGCAGCAGCCACAGCAGCAGCCGCTTTTATCCCCACAGCAACTGCAACCGCAGCCTCCGGCCCATCAGCTTCAGGCGCAGCAGCATCAACATCACCATCATCAGCTTCAGGAGCAGCTATTTCTACGGCCACAACAACCGCAACCGTATCAGGATCAGCATCAACATCATCAGCCTCCGCACAATCAGCTTCAGGAGCAGCTGCTTCTACAGCCGCATCAACATCAAGAGCAATCGGAGGACACGGATGGTAGGAGCGTCGGTCCTTCTTGA 1203 0.547 MSSSKTPCAACKLQRRKCTQECVFAPYFPPDNPRKFSNVQQVFGASNVSKLLTELNVAHREEAVRSLAYEAEARLRDPVYGCVGLISVLQQRLRHVQNEVDKAKKELATYIGPQALQPMVPVLDPHHGMVPLHPHHQGNVYGPSVFPYNNMPPQAMGARGGQLVIREPQQQHRDEQQMLGSQLATDMEVRQVQELFGIYDQQQQPPTTQQQQKDFMSYGGGGGAEMGSVSGSGFNQPPEMSPSLALNTYDNTYRSVQLQQSQGGDQQHHHHQAPRHHLQEQMLLPPQQPQQPQHQNQPLHHQLQEQLLLSPQQPQQQPLLSPQQLQPQPPAHQLQAQQHQHHHHQLQEQLFLRPQQPQPYQDQHQHHQPPHNQLQEQLLLQPHQHQEQSEDTDGRSVGPS 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4943g00006 400 MobiDBLite consensus disorder prediction 199 216 - -
Pral4943g00006 400 MobiDBLite consensus disorder prediction 349 385 - -
Pral4943g00006 400 Pfam Lateral organ boundaries (LOB) domain 7 104 IPR004883 -
Pral4943g00006 400 MobiDBLite consensus disorder prediction 229 267 - -
Pral4943g00006 400 MobiDBLite consensus disorder prediction 312 400 - -
Pral4943g00006 400 MobiDBLite consensus disorder prediction 312 336 - -
Pral4943g00006 400 Coils Coil 86 106 - -
Pral4943g00006 400 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 4 317 - -
Pral4943g00006 400 ProSiteProfiles LOB domain profile. 6 107 IPR004883 -
Pral4943g00006 400 MobiDBLite consensus disorder prediction 199 278 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4943g00006 Pral-Chr4943 36661 40079 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4943g00006 1 236 AS2 family AT5G66870 48.760 1.45e-59 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Pral4943g00006 LOB 1.1e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4943g00006 - - pcin:129311998 441.81