Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4940g00011 ACCTCTCTGTTCAACGTAAACTGCCTCTCCCATACTCTGGCTCTCGAAATGGTGAACCAGAAGCGAAGGGCTGGAAGGAAGAAGTTCCAGGAGACTCGTCATCCAACATACAAAGGCGTGAGGCAAAGAAACGGCAAGTGGGTTTGCGAGCTTCGGCAACCTAACAACAACAAAGCACGCTTGTGGCTCGGCACTTTTGCCAACCCTGCCACGGCTGCCATAGCCCACGACGTCGCTGCTCTTTCTTTCAAGGGCGATTCTGCGTCCCTGAATTTCCCTGACGCTGCCTCCTCCTTGCCCCTTAATCCACACACCTCCTCCCTCAGGTCCATCCAGTTCGCGGCCATGGAAGCGGCTGAGAAGCGTCTCTGCGGTGACGATGCTGGGAAAAACGTCTCGGCTTTGTCTCTGGACTGTAACTCTGAGTACTCGGAAGCATTAGAAGAAGGAGGGGACGCGGCGGCGAGGAGCATGTATTGGGATGAAGAAGAGGTATTTAACATGCCTGCACTCATGAACAGTATGGCAGAAGGGTTGATCATCACACCGCCAGCCTTGCAGAGAGGCTTCAACTGGGATGACATCGAAACTACCACCGACTTGACTCTCTGGGGAGACTGA 621 0.5411 TSLFNVNCLSHTLALEMVNQKRRAGRKKFQETRHPTYKGVRQRNGKWVCELRQPNNNKARLWLGTFANPATAAIAHDVAALSFKGDSASLNFPDAASSLPLNPHTSSLRSIQFAAMEAAEKRLCGDDAGKNVSALSLDCNSEYSEALEEGGDAAARSMYWDEEEVFNMPALMNSMAEGLIITPPALQRGFNWDDIETTTDLTLWGD 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4940g00011 206 SUPERFAMILY DNA-binding domain 36 94 IPR016177 GO:0003677
Pral4940g00011 206 Gene3D AP2/ERF domain 36 94 IPR036955 GO:0003700|GO:0006355
Pral4940g00011 206 ProSiteProfiles AP2/ERF domain profile. 36 93 IPR001471 GO:0003700|GO:0006355
Pral4940g00011 206 SMART rav1_2 36 99 IPR001471 GO:0003700|GO:0006355
Pral4940g00011 206 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 16 204 IPR045277 GO:0003700
Pral4940g00011 206 CDD AP2 37 95 IPR001471 GO:0003700|GO:0006355
Pral4940g00011 206 PRINTS Ethylene responsive element binding protein signature 37 48 IPR001471 GO:0003700|GO:0006355
Pral4940g00011 206 PRINTS Ethylene responsive element binding protein signature 75 95 IPR001471 GO:0003700|GO:0006355
Pral4940g00011 206 Pfam AP2 domain 35 84 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4940g00011 Pral-Chr4940 67761 68381 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4940g00011 21 204 AP2-EREBP Transcription Factor Family AT4G25470 46.073 4.86e-46 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Pral4940g00011 AP2 1.7e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4940g00011 - - lja:Lj5g3v0712260.1 244.973