Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4940g00009 ATGCGTTCCAATACTCACTCTAGTTCTACCAGCGCTGCCACCGGAGCTAGCAGCAGCAGCGGTGCAGCAACCGGGCGTCACCCGGTGTACAGGGGAGTGAGGCGTCGGAGTAGCGGGAAATGGGTGTCTGAAATTCGGGAGCCCAGGAAGCCCAATAGGATATGGTTAGGGACATTCCCTACCCCTGAAATGGCTGCCATTGCCTATGACGTGGCCGCCCTTGCCCTCAAAGGTAAGGACGCTGACCTTAACTTCCCTGACTCGGCTTCTTCGCTGCCCGTTCCGGCCTCTGGCTCTGCCCGTGATATCCAGATTGCTGCAGCCAGTGCTGCTGCTGCTGCTGGGGCAGCCAGGGATGCCTTACCCGTGCCTAATGAACAAGGGAATGCTAATGTTGGTGCTTCGGAGGGACAACAATATGGGGGTGCTGAGTTTGTGGACGAGGATTTAATCTTCGATTTACCTAATGTTCTTGTCAATATGGCCGAAGGAATGCTGCTCACCCCTCCTCCTCTGGACTTTACTGGGAACAACGATGCTGATGATGCTGCCGGAGGGAACGTCGGTGGCGATGATCAAAACCTTTGGAAATTTCCATAA 600 0.55 MRSNTHSSSTSAATGASSSSGAATGRHPVYRGVRRRSSGKWVSEIREPRKPNRIWLGTFPTPEMAAIAYDVAALALKGKDADLNFPDSASSLPVPASGSARDIQIAAASAAAAAGAARDALPVPNEQGNANVGASEGQQYGGAEFVDEDLIFDLPNVLVNMAEGMLLTPPPLDFTGNNDADDAAGGNVGGDDQNLWKFP 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4940g00009 199 CDD AP2 30 88 IPR001471 GO:0003700|GO:0006355
Pral4940g00009 199 PRINTS Ethylene responsive element binding protein signature 68 88 IPR001471 GO:0003700|GO:0006355
Pral4940g00009 199 PRINTS Ethylene responsive element binding protein signature 30 41 IPR001471 GO:0003700|GO:0006355
Pral4940g00009 199 FunFam Ethylene-responsive transcription factor 2 28 87 - -
Pral4940g00009 199 Pfam AP2 domain 28 78 IPR001471 GO:0003700|GO:0006355
Pral4940g00009 199 SUPERFAMILY DNA-binding domain 29 88 IPR016177 GO:0003677
Pral4940g00009 199 MobiDBLite consensus disorder prediction 1 43 - -
Pral4940g00009 199 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 24 197 IPR045277 GO:0003700
Pral4940g00009 199 ProSiteProfiles AP2/ERF domain profile. 29 86 IPR001471 GO:0003700|GO:0006355
Pral4940g00009 199 MobiDBLite consensus disorder prediction 176 199 - -
Pral4940g00009 199 Gene3D AP2/ERF domain 29 87 IPR036955 GO:0003700|GO:0006355
Pral4940g00009 199 SMART rav1_2 29 92 IPR001471 GO:0003700|GO:0006355
Pral4940g00009 199 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4940g00009 Pral-Chr4940 43797 45163 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4940g00009 25 199 AP2-EREBP Transcription Factor Family AT2G36450 65.000 3.78e-58 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pral4940g00009 AP2 6.9e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4940g00009 - - jcu:105629512 225.328