Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral4940g00007 ATGGAAGATCACCACAACAATCATCATCATCCCCAGCAATATGGCATGGCGGATCTCAGGCAGCTCATGAATGGAGGTCCCAGGTCGACTGCTACACATTTCTCCTCCCTGCCTCCGCAGCCCACGGCGGAGCTCTTCCAGGCTCACCGGAACCTCACGCCCACCCACCATCAGCACTACGACATGATGATGTTCGGTCGCCATGTCGCCGATGTAATGCCTCGTGCCCTCCACGACTTTGCCTCCGATTCACCTCCTGCCGCTGCTCCACCCACAAACAATATTACTGTAGCCACTCCGGCTACCACCGCCAGCGCTTTCACCCCTCCACTCAGTGGCTTAGAGGCTGAGACCCCTGGCTGCCTCGCCGGGGATGCCTCCACGGGAAGATGGCCCAGGCAGGAAACACTCACTCTTCTTGAGATCAGATCTCGTCTCGACCCTAAATTCAAAGAAGCCAATCAGAAAGGCCCCTTATGGGACGAAGTCTCTAGGATCATGTCGGAAGAATATGGCTACCAAAGGAGTGGGAAGAAATGCAGGGAAAAATTCGAGAACTTGTACAAATATTACAAGAAGACAAAGGAAGGTAAGGCAAGGAGACAGGATGGGAAGCATTACAGGTTCTTCCGTCAACTTGAAGCTTTGTATGGAGGAAACAGCAACTCGACCTCAGTGCAAGAAACCAATTATGGCAGCAGCGGAATTCGCTTTCAGACACCCTCCCAAACAAATCAAGACATGTTTCAGTCTCACAACCACAAGACTTGTGATAGCCTCAGCCTCACAAACTCAACAGATTTCGGCACGTCATCATCGGAGGACAACAATCTTTGCAGTATGGAAAATGATTCGACGGAGAAGGGGAGGAAGAGGAGTAGTGGAAGCAGATGGAAGGCAAAAATAAAAGAGTTCATTGACTCACAGATGAAGAAGCTGATTGAGAAGCAAGAGGCGTGGATGGATAGGCTAGTGAAGACGCTTGAACAGAAGGAGAAGGAGAGGATTTCAAGAGAGGAAGAATGGAGAAGACAAGAGGCAGCGAGGTTGGAAATGGAGCACAAGTTTCGTGCTAAAGAGAGAGCATGGATTGAAGCAAGGGATGCTGCTCTAATGGACGCCTTGCAGAAACTAACGGGAAGAGAGGTAAAAGCTCAATCTCCGGTTGAGCAGGCCCTAATTGTGGCTAATGAAATTCAGAATCCTAGGGAAAACCAGAACGAAGAGGGAAGTGAAATCCTCAACGGTAGCAATAGAGGTGTTGACAACTGGCCAAAAAGTGAGACAACAAGGCTCCTAGAGTTGAGGGCGGAGATGGAGTCTGGGTTTCAGCAAAGTGGGTGCTCGGAAGAGGTTATGTGGGAGGAAATAGCCAACAAAATGGCTTGCTTTGGCTACGAAAGGACTGCTTTGATGTGCAAACACAAGTGGGAAAGCATAAACAGCTTTACAAATACCAAGGAAGGAATCAAGAAGCGCAAGGAAAAGTCTAGAAGCTGTTTTTACTTCGACAACAACGTCAATGACCAGCCATCCTTGTATAACCAAGGAACTACTCCGTATTGTGATATCGACGTTAACGATCAACGGCACGACAATGAGAGGCTACAAACAAATAATGGCTCGTCGCCTTCAAATTCCAATGCGGTTGCGGCGGACGTTAACTGTTTTCCCTTCTTTATCAGCACTGAAGGATCAGAAAATTTGTGGGAAAACTACGGCTTGAAGATTAACAAAGGAAATCAAAACCAGTGA 1755 0.4838 MEDHHNNHHHPQQYGMADLRQLMNGGPRSTATHFSSLPPQPTAELFQAHRNLTPTHHQHYDMMMFGRHVADVMPRALHDFASDSPPAAAPPTNNITVATPATTASAFTPPLSGLEAETPGCLAGDASTGRWPRQETLTLLEIRSRLDPKFKEANQKGPLWDEVSRIMSEEYGYQRSGKKCREKFENLYKYYKKTKEGKARRQDGKHYRFFRQLEALYGGNSNSTSVQETNYGSSGIRFQTPSQTNQDMFQSHNHKTCDSLSLTNSTDFGTSSSEDNNLCSMENDSTEKGRKRSSGSRWKAKIKEFIDSQMKKLIEKQEAWMDRLVKTLEQKEKERISREEEWRRQEAARLEMEHKFRAKERAWIEARDAALMDALQKLTGREVKAQSPVEQALIVANEIQNPRENQNEEGSEILNGSNRGVDNWPKSETTRLLELRAEMESGFQQSGCSEEVMWEEIANKMACFGYERTALMCKHKWESINSFTNTKEGIKKRKEKSRSCFYFDNNVNDQPSLYNQGTTPYCDIDVNDQRHDNERLQTNNGSSPSNSNAVAADVNCFPFFISTEGSENLWENYGLKINKGNQNQ 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral4940g00007 584 Pfam Myb/SANT-like DNA-binding domain 130 216 IPR044822 -
Pral4940g00007 584 Pfam Myb/SANT-like DNA-binding domain 422 504 IPR044822 -
Pral4940g00007 584 MobiDBLite consensus disorder prediction 268 283 - -
Pral4940g00007 584 ProSiteProfiles Myb-like domain profile. 123 188 IPR001005 -
Pral4940g00007 584 PANTHER FI21293P1 112 535 - -
Pral4940g00007 584 FunFam trihelix transcription factor PTL-like 131 193 - -
Pral4940g00007 584 CDD GT1 423 488 - -
Pral4940g00007 584 Coils Coil 314 341 - -
Pral4940g00007 584 ProSiteProfiles Myb-like domain profile. 416 481 IPR001005 -
Pral4940g00007 584 Gene3D - 424 483 - -
Pral4940g00007 584 Gene3D - 131 193 - -
Pral4940g00007 584 SMART sant 127 190 IPR001005 -
Pral4940g00007 584 SMART sant 420 483 IPR001005 -
Pral4940g00007 584 MobiDBLite consensus disorder prediction 221 250 - -
Pral4940g00007 584 CDD GT1 130 195 - -
Pral4940g00007 584 FunFam Trihelix transcription factor GT-2 424 486 - -
Pral4940g00007 584 MobiDBLite consensus disorder prediction 402 421 - -
Pral4940g00007 584 MobiDBLite consensus disorder prediction 268 295 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral4940g00007 Pral-Chr4940 26557 57650 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral4940g00007 10 579 Trihelix Transcription Factor Family AT5G03680 46.777 1.25e-140 419
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Pral4940g00007 Myb_DNA-bind_4 9.7e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral4940g00007 - - aprc:113870891 753.051